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Aliases for MNX1-AS1 Gene

Subcategory (RNA class) for MNX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MNX1-AS1 Gene

  • MNX1 Antisense RNA 1 (Head To Head) 2 3 5
  • CCAT5 3

External Ids for MNX1-AS1 Gene

Previous GeneCards Identifiers for MNX1-AS1 Gene

  • GC07P156814
  • GC07P156816

Summaries for MNX1-AS1 Gene

GeneCards Summary for MNX1-AS1 Gene

MNX1-AS1 (MNX1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MNX1-AS1 Gene

Genomics for MNX1-AS1 Gene

Regulatory Elements for MNX1-AS1 Gene

Enhancers for MNX1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F156931 1 Ensembl ENCODE 10.7 -78.7 -78681 1.8 SOX13 PKNOX1 JUN RAD21 YY1 ZNF366 ATF3 SCRT2 PBX2 ZBTB33 MNX1-AS2 MNX1 MNX1-AS1 NOM1 LMBR1 LOC105375604 LOC102723795
GH07F157005 1.3 FANTOM5 ENCODE 7.8 -2.9 -2923 4.0 HDGF ATF1 SIN3A FEZF1 ZNF2 GLIS2 ZNF207 KLF7 ZHX2 TSHZ1 MNX1 MNX1-AS1 NOM1 GC07M157007 MNX1-AS2
GH07F157158 0.9 ENCODE 11.1 +147.9 147921 1.4 HDGF ARNT ZNF76 INSM2 NFXL1 ZNF2 ZNF335 ZNF366 ZNF391 RCOR1 MNX1 MNX1-AS1 MNX1-AS2 GC07M157142 GC07P157193 GC07P157194
GH07F156998 1.2 Ensembl ENCODE 8 -10.7 -10708 2.3 PKNOX1 NFRKB KLF17 RAD21 RARA GLIS2 ZNF362 SP5 CEBPB ELF1 ENSG00000236102 LOC645272 ENSG00000269446 ENSG00000231515 NOM1 LOC105375605 MNX1-AS1 MNX1-AS2 PIR33298
GH07F156829 0.9 Ensembl ENCODE 10 -181.1 -181105 0.6 RNF2 DPF2 CEBPG ZNF217 CTBP1 GATA3 FOS TRIM28 SETDB1 C7orf13 MNX1-AS2 MNX1 MNX1-AS1 NOM1 GC07P156873 GC07M156670
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MNX1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MNX1-AS1 Gene

Chromosome:
7
Start:
157,010,805 bp from pter
End:
157,016,426 bp from pter
Size:
5,622 bases
Orientation:
Plus strand

Genomic View for MNX1-AS1 Gene

Genes around MNX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MNX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MNX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MNX1-AS1 Gene

Proteins for MNX1-AS1 Gene

Post-translational modifications for MNX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MNX1-AS1 Gene

Domains & Families for MNX1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MNX1-AS1 Gene

Function for MNX1-AS1 Gene

Phenotypes for MNX1-AS1 Gene

GenomeRNAi human phenotypes for MNX1-AS1:
genes like me logo Genes that share phenotypes with MNX1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MNX1-AS1 Gene

Localization for MNX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MNX1-AS1 Gene

Pathways & Interactions for MNX1-AS1 Gene

SuperPathways for MNX1-AS1 Gene

No Data Available

Interacting Proteins for MNX1-AS1 Gene

Gene Ontology (GO) - Biological Process for MNX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MNX1-AS1 Gene

Transcripts for MNX1-AS1 Gene

mRNA/cDNA for MNX1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MNX1-AS1 Gene

No ASD Table

Relevant External Links for MNX1-AS1 Gene

GeneLoc Exon Structure for
MNX1-AS1
ECgene alternative splicing isoforms for
MNX1-AS1

Expression for MNX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MNX1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MNX1-AS1 Gene

This gene is overexpressed in Pancreas (x19.2) and Testis (x7.8).
genes like me logo Genes that share expression patterns with MNX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MNX1-AS1 Gene

Orthologs for MNX1-AS1 Gene

Evolution for MNX1-AS1 Gene

ENSEMBL:
Gene Tree for MNX1-AS1 (if available)
TreeFam:
Gene Tree for MNX1-AS1 (if available)

No data available for Orthologs for MNX1-AS1 Gene

Paralogs for MNX1-AS1 Gene

No data available for Paralogs for MNX1-AS1 Gene

Variants for MNX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MNX1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs121912547 Pathogenic 157,009,859(-) GTCTA(A/C)GGCTA upstream-variant-2KB, reference, stop-gained
rs548755417 Likely benign 157,009,949(+) CCCCA(-/GCG/GCGGCG)GCGGC upstream-variant-2KB, cds-indel
rs10240188 -- 157,013,769(+) TGTCC(A/G)GACCG intron-variant
rs10262191 -- 157,011,816(+) GAATC(A/C)ACACA intron-variant, upstream-variant-2KB
rs10274030 -- 157,014,178(+) GCTAC(C/G)AAACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MNX1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951667 CNV deletion 24416366
nsv609210 CNV loss 21841781
nsv6022 CNV insertion 18451855
nsv465249 CNV loss 19166990
dgv1150n67 CNV gain 20364138

Relevant External Links for MNX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MNX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MNX1-AS1 Gene

Disorders for MNX1-AS1 Gene

Relevant External Links for MNX1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MNX1-AS1

No disorders were found for MNX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MNX1-AS1 Gene

Publications for MNX1-AS1 Gene

  1. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T. … Croce C.M. (J. Natl. Cancer Inst. 2015) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MNX1-AS1 Gene

Sources for MNX1-AS1 Gene

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