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Aliases for MNX1-AS1 Gene

Subcategory (RNA class) for MNX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MNX1-AS1 Gene

  • MNX1 Antisense RNA 1 (Head To Head) 2 3 5
  • CCAT5 3

External Ids for MNX1-AS1 Gene

Previous GeneCards Identifiers for MNX1-AS1 Gene

  • GC07P156814
  • GC07P156816

Summaries for MNX1-AS1 Gene

GeneCards Summary for MNX1-AS1 Gene

MNX1-AS1 (MNX1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MNX1-AS1 Gene

Genomics for MNX1-AS1 Gene

Regulatory Elements for MNX1-AS1 Gene

Enhancers for MNX1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G157018 1.6 dbSUPER 7.9 +8.4 8362 1.4 RING1 RNF2 SUZ12 BHLHE40 CHD1 CBX2 EGR1 GABPB1 CTBP2 EZH2 MNX1-AS1 NOM1 ENSG00000236102
GH07G157158 1.1 Ensembl ENCODE 11.1 +147.9 147921 1.4 HDGF ARNT ZNF76 INSM2 NFXL1 ZNF2 ZNF335 ZNF366 ZNF391 RCOR1 MNX1-AS1 MNX1 MNX1-AS2 GC07M157142 GC07P157193 GC07P157194
GH07G157005 1.5 FANTOM5 ENCODE dbSUPER 7.8 -2.9 -2923 4.0 HDGF FOXA2 ATF1 SIN3A FEZF1 ZNF2 GLIS2 ZNF207 KLF7 ZHX2 MNX1 MNX1-AS1 NOM1 MNX1-AS2 GC07M157007
GH07G156998 1.4 Ensembl ENCODE dbSUPER 8.1 -10.7 -10708 2.3 HDGF PKNOX1 ARNT GLIS2 KDM4B SP5 SMARCA4 GLIS1 ZNF624 NBN NOM1 MNX1-AS1 MNX1-AS2 PIR33298
GH07G157010 1.3 ENCODE dbSUPER 7.8 +0.1 95 1.6 HDGF FOXA2 ARNT CREB3L1 AGO1 ARID4B SIN3A FEZF1 ZNF766 ZNF207 MNX1 MNX1-AS1 ENSG00000236102
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MNX1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MNX1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000220179 -405 1201 HDGF ATF1 ARNT CREB3L1 AGO1 SIN3A ZNF766 GLIS2 ZNF207 ZNF143

Genomic Location for MNX1-AS1 Gene

Chromosome:
7
Start:
157,010,805 bp from pter
End:
157,016,426 bp from pter
Size:
5,622 bases
Orientation:
Plus strand

Genomic View for MNX1-AS1 Gene

Genes around MNX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MNX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MNX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MNX1-AS1 Gene

Proteins for MNX1-AS1 Gene

Post-translational modifications for MNX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MNX1-AS1 Gene

Domains & Families for MNX1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MNX1-AS1 Gene

Function for MNX1-AS1 Gene

Phenotypes for MNX1-AS1 Gene

GenomeRNAi human phenotypes for MNX1-AS1:
genes like me logo Genes that share phenotypes with MNX1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MNX1-AS1 Gene

Localization for MNX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MNX1-AS1 Gene

Pathways & Interactions for MNX1-AS1 Gene

SuperPathways for MNX1-AS1 Gene

No Data Available

Interacting Proteins for MNX1-AS1 Gene

Gene Ontology (GO) - Biological Process for MNX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MNX1-AS1 Gene

Drugs & Compounds for MNX1-AS1 Gene

No Compound Related Data Available

Transcripts for MNX1-AS1 Gene

mRNA/cDNA for MNX1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MNX1-AS1 Gene

No ASD Table

Relevant External Links for MNX1-AS1 Gene

GeneLoc Exon Structure for
MNX1-AS1
ECgene alternative splicing isoforms for
MNX1-AS1

Expression for MNX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MNX1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MNX1-AS1 Gene

This gene is overexpressed in Pancreas (x19.2) and Testis (x7.8).
genes like me logo Genes that share expression patterns with MNX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MNX1-AS1 Gene

Orthologs for MNX1-AS1 Gene

Evolution for MNX1-AS1 Gene

ENSEMBL:
Gene Tree for MNX1-AS1 (if available)
TreeFam:
Gene Tree for MNX1-AS1 (if available)

No data available for Orthologs for MNX1-AS1 Gene

Paralogs for MNX1-AS1 Gene

No data available for Paralogs for MNX1-AS1 Gene

Variants for MNX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for MNX1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs121912547 Pathogenic 157,009,859(-) GTCTA(A/C)GGCTA upstream-variant-2KB, reference, stop-gained
rs548755417 Likely benign 157,009,949(+) CCCCA(-/GCG/GCGGCG)GCGGC upstream-variant-2KB, cds-indel
rs1000243545 -- 157,016,580(+) CTGCA(G/T)CTGCT downstream-variant-500B
rs1002302115 -- 157,011,599(+) GGAAG(C/T)CCTGC intron-variant, upstream-variant-2KB
rs1002333153 -- 157,011,332(+) GGGGT(G/T)TAAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MNX1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1150n67 CNV gain 20364138
nsv465249 CNV loss 19166990
nsv6022 CNV insertion 18451855
nsv609210 CNV loss 21841781
nsv951667 CNV deletion 24416366

Relevant External Links for MNX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MNX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MNX1-AS1 Gene

Disorders for MNX1-AS1 Gene

Relevant External Links for MNX1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MNX1-AS1

No disorders were found for MNX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MNX1-AS1 Gene

Publications for MNX1-AS1 Gene

  1. Long Noncoding RNA MNX1-AS1 Knockdown Inhibits Cell Proliferation and Migration in Ovarian Cancer. (PMID: 28414551) Lv Y. … Zhao X. (Cancer Biother. Radiopharm. 2017) 2 3 64
  2. The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration. (PMID: 27797375) Matsumura K. … Akiyama T. (Oncogene 2017) 2 3 64
  3. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. (PMID: 25663692) Kim T. … Croce C.M. (J. Natl. Cancer Inst. 2015) 2 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for MNX1-AS1 Gene

Sources for MNX1-AS1 Gene

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