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Aliases for MNS1 Gene

Aliases for MNS1 Gene

  • Meiosis Specific Nuclear Structural 1 2 3 5
  • Spermatogenesis Associated 40 2 3
  • Meiosis-Specific Nuclear Structural Protein 1 3
  • SPATA40 3

External Ids for MNS1 Gene

Previous GeneCards Identifiers for MNS1 Gene

  • GC15M054300
  • GC15M054437
  • GC15M054508
  • GC15M056720
  • GC15M033544

Summaries for MNS1 Gene

Entrez Gene Summary for MNS1 Gene

  • This gene encodes a protein highly similar to the mouse meiosis-specific nuclear structural 1 protein. The mouse protein was shown to be expressed at the pachytene stage during spermatogenesis and may function as a nuclear skeletal protein to regulate nuclear morphology during meiosis. [provided by RefSeq, Oct 2008]

GeneCards Summary for MNS1 Gene

MNS1 (Meiosis Specific Nuclear Structural 1) is a Protein Coding gene. GO annotations related to this gene include identical protein binding.

UniProtKB/Swiss-Prot for MNS1 Gene

  • May play a role in the control of meiotic division and germ cell differentiation through regulation of pairing and recombination during meiosis.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MNS1 Gene

Genomics for MNS1 Gene

Regulatory Elements for MNS1 Gene

Enhancers for MNS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G056464 1 ENCODE 0.7 +0.1 67 1.3 ATF1 CREB3L1 ARID4B SIN3A ZNF2 ETS1 GLIS2 ZNF207 FOS SP3 TEX9 MNS1 PIR31560 GC15M056459
GH15G056184 0.4 FANTOM5 1.6 +281.3 281326 0.3 ATF3 MNS1 LOC390586 GC15P056091
GH15G056425 0.3 FANTOM5 1.9 +39.3 39305 0.2 RFX7 MNS1 ZNF280D TEX9 ENSG00000261823 ENSG00000277245
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MNS1 on UCSC Golden Path with GeneCards custom track

Promoters for MNS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000076906 137 1201 ATF1 CREB3L1 ARID4B SIN3A ZNF2 ETS1 GLIS2 ZNF207 FOS MXD4

Genomic Location for MNS1 Gene

Chromosome:
15
Start:
56,421,544 bp from pter
End:
56,465,137 bp from pter
Size:
43,594 bases
Orientation:
Minus strand

Genomic View for MNS1 Gene

Genes around MNS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MNS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MNS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MNS1 Gene

Proteins for MNS1 Gene

  • Protein details for MNS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NEH6-MNS1_HUMAN
    Recommended name:
    Meiosis-specific nuclear structural protein 1
    Protein Accession:
    Q8NEH6
    Secondary Accessions:
    • Q8IYT6
    • Q9NUP4

    Protein attributes for MNS1 Gene

    Size:
    495 amino acids
    Molecular mass:
    60571 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MNS1 Gene

Post-translational modifications for MNS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for MNS1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MNS1 Gene

Domains & Families for MNS1 Gene

Protein Domains for MNS1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8NEH6

UniProtKB/Swiss-Prot:

MNS1_HUMAN :
  • Belongs to the MNS1 family.
Family:
  • Belongs to the MNS1 family.
genes like me logo Genes that share domains with MNS1: view

No data available for Gene Families for MNS1 Gene

Function for MNS1 Gene

Molecular function for MNS1 Gene

UniProtKB/Swiss-Prot Function:
May play a role in the control of meiotic division and germ cell differentiation through regulation of pairing and recombination during meiosis.

Gene Ontology (GO) - Molecular Function for MNS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042802 identical protein binding IDA 22396656
genes like me logo Genes that share ontologies with MNS1: view
genes like me logo Genes that share phenotypes with MNS1: view

Animal Models for MNS1 Gene

MGI Knock Outs for MNS1:

Animal Model Products

CRISPR Products

miRNA for MNS1 Gene

miRTarBase miRNAs that target MNS1

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for MNS1 Gene

Localization for MNS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MNS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MNS1 gene
Compartment Confidence
nucleus 5
cytoskeleton 2
endoplasmic reticulum 2
cytosol 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for MNS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope IEA --
GO:0005882 intermediate filament IEA --
GO:0005930 axoneme IEA --
GO:0031514 motile cilium IBA --
GO:0036126 sperm flagellum IEA --
genes like me logo Genes that share ontologies with MNS1: view

Pathways & Interactions for MNS1 Gene

No Data Available

Interacting Proteins for MNS1 Gene

Gene Ontology (GO) - Biological Process for MNS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0044782 cilium organization IEA,IBA --
GO:0045724 positive regulation of cilium assembly IEA --
GO:0051321 meiotic cell cycle IEA --
GO:0070986 left/right axis specification IEA --
genes like me logo Genes that share ontologies with MNS1: view

No data available for Pathways by source and SIGNOR curated interactions for MNS1 Gene

Drugs & Compounds for MNS1 Gene

No Compound Related Data Available

Transcripts for MNS1 Gene

mRNA/cDNA for MNS1 Gene

Unigene Clusters for MNS1 Gene

Meiosis-specific nuclear structural 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MNS1 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10
SP1:
SP2:
SP3:
SP4: -

Relevant External Links for MNS1 Gene

GeneLoc Exon Structure for
MNS1
ECgene alternative splicing isoforms for
MNS1

Expression for MNS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MNS1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MNS1 Gene

This gene is overexpressed in Testis (x12.5).

Protein differential expression in normal tissues from HIPED for MNS1 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (41.5), Adipocyte (10.8), and Spinal cord (8.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MNS1 Gene



Protein tissue co-expression partners for MNS1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MNS1 Gene:

MNS1

SOURCE GeneReport for Unigene cluster for MNS1 Gene:

Hs.444483
genes like me logo Genes that share expression patterns with MNS1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MNS1 Gene

Orthologs for MNS1 Gene

This gene was present in the common ancestor of animals.

Orthologs for MNS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MNS1 34 35
  • 99.66 (n)
dog
(Canis familiaris)
Mammalia MNS1 34 35
  • 89.63 (n)
cow
(Bos Taurus)
Mammalia MNS1 34 35
  • 88.71 (n)
rat
(Rattus norvegicus)
Mammalia Mns1 34
  • 76.36 (n)
mouse
(Mus musculus)
Mammalia Mns1 34 16 35
  • 76.1 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MNS1 35
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MNS1 35
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC426295 34
  • 70 (n)
MNS1 35
  • 50 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MNS1 35
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mns1 34
  • 65.71 (n)
Str.7024 34
zebrafish
(Danio rerio)
Actinopterygii mns1 34 35
  • 59.77 (n)
sbcb494 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004208 34
  • 50 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2336 34
Species where no ortholog for MNS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MNS1 Gene

ENSEMBL:
Gene Tree for MNS1 (if available)
TreeFam:
Gene Tree for MNS1 (if available)

Paralogs for MNS1 Gene

No data available for Paralogs for MNS1 Gene

Variants for MNS1 Gene

Sequence variations from dbSNP and Humsavar for MNS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000081094 -- 56,430,176(+) ATATG(A/C)GTCTA intron-variant, downstream-variant-500B
rs1000102824 -- 56,439,771(+) CAAAA(A/G)AACAA intron-variant
rs1000135877 -- 56,436,313(+) AAAAC(C/T)GCTCA intron-variant, downstream-variant-500B
rs1000208409 -- 56,436,166(+) CAGCA(C/T)CACAC intron-variant, downstream-variant-500B
rs1000379273 -- 56,466,285(+) GGTTG(C/G)GCACT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MNS1 Gene

Variant ID Type Subtype PubMed ID
dgv10n31 CNV loss 19718026
esv2525559 CNV loss 19546169
esv2760033 CNV loss 17122850
esv35150 CNV loss 17911159
esv3892699 CNV gain 25118596
nsv1545 CNV deletion 18451855
nsv433294 CNV loss 18776910
nsv498847 CNV loss 21111241
nsv510662 CNV deletion 20534489
nsv9270 CNV loss 18304495

Variation tolerance for MNS1 Gene

Residual Variation Intolerance Score: 23.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.03; 60.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MNS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MNS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MNS1 Gene

Disorders for MNS1 Gene

Relevant External Links for MNS1

Genetic Association Database (GAD)
MNS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MNS1

No disorders were found for MNS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MNS1 Gene

Publications for MNS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Meiosis specific transcription and functional proteins. (PMID: 7625268) Hotta Y. … Tabata S. (Adv. Biophys. 1995) 2 3 64
  3. cDNA cloning and functional characterization of a meiosis-specific protein (MNS1) with apparent nuclear association. (PMID: 8032679) Furukawa K. … Hotta Y. (Chromosome Res. 1994) 2 3 64
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64
  5. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein J.I. … Sullivan P.F. (Nat Commun 2014) 3 64

Products for MNS1 Gene

Sources for MNS1 Gene

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