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MN1 Gene

protein-coding   GIFtS: 51

GC22M026468
meningioma (disrupted in balanced translocation) 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
MGCR 2, 5
MGCR1 2
MGCR1-PEN 1, 2
OTTHUMP00000028743 2
dJ353E16.2 2
Descriptions
bK437G10B.1 (meningioma (disrupted in balanced
translocation) 1) 2
meningioma (disrupted in balanced translocation) 1 2
meningioma (translocation balanced) 2
meningioma 1 2
meningioma chromosome region 1 2
probable tumor suppressor protein MN1 2
External Ids
HGNC: 71801
Entrez Gene: 43302
UniProtKB: Q105713
Ensembl: ENSG000001691847
Search outside databases for aliases for MN1 gene

Previous GC identifer: GC22M024840

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for MN1:
Meningioma 1 (MN1) contains two sets of CAG repeats. It is disrupted by a balanced translocation
(4;22) in a meningioma, and its inactivation may contribute to meningioma 32 pathogenesis.
[provided by RefSeq]

UniProtKB/Swiss-Prot: MN1_HUMAN, Q10571
Function: May play a role in tumor suppression

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the MN1 gene  

Entrez Gene cytogenetic band: 22q11|22q12.1   Ensembl cytogenetic band:  22q12.1   HGNC cytogenetic band: 22q12.1

MN1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22M026468:     (about GC identifiers)

Start:
26,474,265 bp from pter
End:
26,527,486 bp from pter
Size:
53,222 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000022.9  NT_011520.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: MN1_HUMAN, Q10571 (See protein sequence)
Recommended Name: Probable tumor suppressor protein MN1  
Size: 1320 amino acids; 136001 Da
Secondary accessions: A9Z1V9

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_002421.3  

    ENSEMBL proteins: 
    ENSP00000304956 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
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    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (MN1)
    Human Recombinant Proteins from Abnova (MN1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575 cellular_component ND--
    GO:0005634 nucleus IDA18029348
    About this table

    Antibodies for MN1: 
    Browse Antibodies Central at Invitrogen
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    Sigma-Aldrich Antibodies for MN1
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (MN1), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for MN1

    Assays for MN1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q10571

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (MN1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002430

                  Applied Biosystems Silencer® siRNAs for MN1

                  Sigma-Aldrich siRNA for MN1  
                         Sigma-Aldrich shRNA for MN1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002430
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002430
                                     untagged cDNA clone in CMV expression vector: NM_002430 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002430

    UniProtKB/Swiss-Prot: MN1_HUMAN, Q10571
    Function: May play a role in tumor suppression

    8 MGI mutant phenotypes (inferred from 1 allele(MGI details for Mn1):

    behavior/neurologicalcraniofacialdigestive/alimentaryhomeostasis/metabolismlethality-prenatal/perinatal
    respiratory systemskeletontumorigenesis

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674 molecular_function ND--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  MN1 


    5/7 Interacting proteins for MN1 (ENSP000003049563) via UniProtKB, MINT, and/or STRING (see all 7 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ETV6ENSP000002664273STRING (score=.905)
    DHRS9ENSP000003501543STRING (score=.89)
    IGFBP5ENSP000002338133STRING (score=.871)
    AP1B1ENSP000003501993STRING (score=.802)
    CHIC2ENSP000002639213STRING (score=.78)
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150 biological_process ND--
    GO:0045786 negative regulation of cell cycle IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for MN1

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (MN1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002430

                  Sigma-Aldrich siRNA for MN1  
                         Sigma-Aldrich shRNA for MN1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_002430  

    REFSEQ mRNAs for MN1 gene: 

    NM_002430.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_002430  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002430
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002430
                                     untagged cDNA clone in CMV expression vector: NM_002430 

    Additional cDNA sequence: 

    AK307152.1 X82209.2 Z70218.1 

    3 DOTS entries:

    DT.313671  DT.120648456  DT.95157898 

    24/61 AceView cDNA sequences (see all 61 ):

    AA340204 BQ446922 CB132163 BQ017335 BU158459 AI338832 BF530976 BI914686 
    AA339316 BE045553 Z39850 AA340193 AU118290 BM821195 BF433623 AW043606 
    AL134518 BQ067881 BI497169 BM927002 BG059788 D51800 CF264930 Z28469 

    highest scoring ESTs for MN1:

    X82209 AA339316 AA340193 AA340204 AA928721 AI277624 AI290447 AI307241 AI334967 AI637666 

    Unigene Cluster for MN1:

    Meningioma (disrupted in balanced translocation) 1
    Hs.268515  [show with all ESTs]
    Unigene Representative Sequence: NM_002430


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000302326  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    MN1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for MN1

    1 / 2 / 3

    4 probe-sets matching MN1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    37283_at2, 3 U95-A 1 1.00 1.00 0.96 1.54 X82209 1.00 1.00 1.00 1

    31486_s_at2, 3 U95-A 1 1.00 1.00 0.85 0.51 Z70218 0.60 1.00 0.82 1

    205330_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002430 0.60 1.00 0.82 1

    205330_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  MN1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: AAATTGAGTG

    SOURCE GeneReport for Unigene cluster: Hs.268515

    Expression variation in blood from EXPOLDB for MN1

    UniProtKB/Swiss-Prot: MN1_HUMAN, Q10571
    Tissue specificity: Ubiquitously expressed. Highest levels in skeletal muscle

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for MN1 gene from 5/6 species (see all 6 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    cow
    (Bos taurus)
    MN11   -- meningioma (disrupted in balanced translocation) 1 83.24(n)
    83.82(a)
    786290  XM_001254017.1  XP_001254018.1 
    rat
    (Rattus norvegicus)
    Mn11   -- meningioma 1 85.69(n)
    91.24(a)
    498194  XM_573413.2  XP_573413.2 
    mouse
    (Mus musculus)
    Mn11, 5 5 (59.00 cM)5
    meningioma 11, 5 85.81(n)1
    91.21(a)1
    4339381  NM_001081235.11  NP_001074704.11 
     AA0036445  AA0092365  (see all 8)
    zebrafish
    (Danio rerio)
    LOC5720771   -- similar to meningioma 1 62.14(n)
    60.21(a)
    572077  XM_001919740.1  XP_001919775.1 
    tropical clawed frog
    (Silurana tropicalis)
    1377231422   --   -- 84.16(n)  137723142 
    About this table        Species with no ortholog for MN1

    ENSEMBL Gene Tree for MN1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/518 NCBI SNPs in MN1 are shown (see all 518 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 146)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 22 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs60056271,2
    A,C,F,H26528577(+) CCCAGA/GCCCTC 1 -- ng319Minor allele frequency- G:0.13EU EA WA NS 600
    rs81367541,2
    A,C,F,H26527815(+) CGGGCT/CCGGGG 1 -- ng3111Minor allele frequency- C:0.17EA WA NS 782
    rs65197251,2
    A,C,F,H26475925(+) GAGAAC/TAGCCT 1 -- ut31 ese313Minor allele frequency- T:0.05EU EA WA NS 1026
    rs37884071,2
    A,C,F,H26529417(+) aatttT/Gaatta 1 -- ng31 tfbs39Minor allele frequency- G:0.23EU EA WA NS 590
    rs57623401,2
    C,F,H26474624(+) TATTCT/GTTCCA 1 -- ut3112Minor allele frequency- G:0.04EU EA WA NA NS 734
    rs57526321,2
    C,F,H26475148(+) GGACCG/AGCAGA 1 -- ut31 ese312Minor allele frequency- A:0.03EU EA WA NA NS 684
    rs174767761,2
    C,F,H26475605(+) TGCAAC/TAGGGT 1 -- ut31 ese311Minor allele frequency- T:0.03NA EU EA WA 982
    --
    rs412778511,2
    C,F26476277(+) CAGGCG/AGAATA 1 -- ut315Minor allele frequency- A:0.01NS 182
    --
    rs412778491,2
    C,F26475327(+) GGGGTG/AGGGGA 1 -- ut315Minor allele frequency- A:0.01NS 170
    --
    rs96135301,2
    C,F26527126(+) GATCCG/ACTCGC 1 -- ut515Minor allele frequency- A:0.01NS 190
    About this table

    HapMap Linkage Disequilibrium images for MN1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 156100   disorders: 607174  

    UniProtKB/Swiss-Prot: MN1_HUMAN, Q10571

  • A chromosomal aberration involving MN1 may be a cause of acute myeloid leukemia (AML).
    Translocation t(12;22)(p13;q11) with TEL
  • Defects in MN1 may be a cause of meningiomas, slowly growing benign tumors derived from
    the arachnoidal cap cells of the leptomeninges, the soft coverings of the brain and spinal cord.
    Meningiomas are believed to be the most common primary tumors of the central nervous system in man
  • 4 Novoseek disease relationships for MN1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    meningioma 68.94 5 7731706 (3), 18632758 (1), 17242174 (1)
    chromosomal aberrations 46.54 1 17335728 (1)
    leukemia 32.73 1 18632758 (1)
    tumors 0.00 2 16398473 (1), 17335728 (1)
    About this table

    Human Genome Epidemiology Navigator: MN1 (1 document)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/24 PubMed articles for MN1 gene (see all 24 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 4330 HGNC: 7180 AceView: MN1 Ensembl:ENSG00000169184 euGenes: HUgn4330
    ECgene: MN1 H-InvDB: MN1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for MN1 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for MN1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for MN1 Antibodies for MN1
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     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
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