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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MMP9 Gene

protein-coding   GIFtS: 73
GCID: GC20P044637

matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase,...

(Previous names: matrix metalloproteinase 9 (gelatinase B, 92kD gelatinase,...)
(Previous symbol: CLG4B)
 Explore 417 diseases affiliated with
MMP9 via our new
 Human Malady Compendium 
Biological research products
for MMP9
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Matrix Metallopeptidase 9 (Gelatinase B, 92kDa Gelatinase, 92kDa Type IV
Collagenase)1 2
     MANDP22 5
CLG4B1 2 3 5     Matrix Metalloproteinase 9 (Gelatinase B, 92kD Gelatinase, 92kD Type IV
Collagenase)1
Matrix Metalloproteinase 9 (Gelatinase B, 92kDa Gelatinase, 92kDa Type IV
Collagenase)1 2
     Macrophage Gelatinase2
92 KDa Gelatinase2 3     Matrix Metalloproteinase-92
92 KDa Type IV Collagenase2 3     Type V Collagenase2
GELB2 3     Gelatinase B3
MMP-92 3     EC 3.4.248
EC 3.4.24.353 8     

External Ids:    HGNC: 71761   Entrez Gene: 43182   Ensembl: ENSG000001009857   OMIM: 1203615   UniProtKB: P147803   

Export aliases for MMP9 gene to outside databases

Previous GC identifers: GC20P044366 GC20P045275 GC20P045322 GC20P044070 GC20P041378


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MMP9:
Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal
physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease
processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when
cleaved by extracellular proteinases. The enzyme encoded by this gene degrades type IV and V collagens. Studies in
rhesus monkeys suggest that the enzyme is involved in IL-8-induced mobilization of hematopoietic progenitor cells from
bone marrow, and murine studies suggest a role in tumor-associated tissue remodeling. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: MMP9_HUMAN, P14780
Function: May play an essential role in local proteolysis of the extracellular matrix and in leukocyte migration. Could
play a role in bone osteoclastic resorption. Cleaves KiSS1 at a Gly- -Leu bond. Cleaves type IV and type V collagen
into large C-terminal three quarter fragments and shorter N-terminal one quarter fragments. Degrades fibronectin but
not laminin or Pz-peptide

summary for MMP9:
Matrix metalloproteases (matrix metalloproteinase, MMPs), also called matrixins, are zinc-dependent
endopeptidases that are the major proteases involved in ECM degradation. MMPs are capable of degrading a
wide range of extracellular molecules and a number of bioactive molecules. 24 matrixin genes have been
identified in humans, which can be organized into six groups based on domain organization and substrate
preference: Collagenases (MMP-1, -8 and -13), Gelatinases (MMP-2 and MMP-9), Stromelysins (MMP-3, -10 and
-11), Matrilysin (MMP-7 and MMP-26), Membrane-type (MT)-MMPs (MMP-14, -15, -16, -17, -24 and -25) and others
(MMP-12, -19, -20, -21, -23, -27 and -28). MMP activity is regulated by two major endogenous inhibitors:
alpha2-macroglobulin and tissue inhibitors of metalloproteases (TIMPs). MMPs play a central role in cell
proliferation, migration, differentiation, angiogenesis, apoptosis and host defences. Dysregulatoin of MMPs
has been implicated in many diseases including arthritis, chronic ulcers, encephalomyelitis and cancer.
Tumour metastasis is a multistep process involving the dessemination of tumor cells from the primary tumor
to secondarys at a distant organ or tissue. One of the first steps in metastasis is the degradation of the
basement membrane, a process in which MMPs have been implicated. MMPs are secreted by tumor cells themselves
or by surrounding stromal cells stimulated by the nearby tumor. Numerous studies have linked altered MMP
expression in different human cancers with poor disease prognosis. MMP-1, -2, -3, -7, -9, -13 and -14 all
have elevated expression in primary tumors and/or metastases. Synthetic or natural inhibitors of MMPs result
in inhibition of metastasis, while up-regulation of MMPs led to enhanced cancer cell invasion.

Gene Wiki entry for MMP9


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000020.10  NC_018931.1  NT_011362.10  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MMP9 gene promoter:
         Max   USF1   USF-1   NRSF form 1   USF2   USF-1:USF-2   NRSF form 2   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMMP9 promoter sequence
   Search SABiosciences Chromatin IP Primers for MMP9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MMP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20q11.2-q13.1   Ensembl cytogenetic band:  20q13.12   HGNC cytogenetic band: 20q12-q13

MMP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MMP9 gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20P044637:  view genomic region     (about GC identifiers)

Start:
44,637,547 bp from pter      End:
44,645,200 bp from pter
Size:
7,654 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MMP9_HUMAN, P14780 (See protein sequence)
Recommended Name: Matrix metalloproteinase-9 precursor  
Size: 707 amino acids; 78458 Da
Cofactor: Binds 2 zinc ions per subunit
Cofactor: Binds 3 calcium ions per subunit
Subunit: Exists as monomer or homodimer; disulfide-linked. Exists also as heterodimer with a 25 kDa protein.
Macrophages and transformed cell lines produce only the monomeric form. Interacts with ECM1
Subcellular location: Secreted, extracellular space, extracellular matrix (Probable)
Miscellaneous: In the arthritis patient this enzyme might contribute to the pathogenesis of joint destruction and might
constitute a useful marker of disease status
6/10 PDB 3D structures from and Proteopedia for MMP9 (see all 10):
1GKC (3D)        1GKD (3D)        1ITV (3D)        1L6J (3D)        1LKG (3D)        2OVX (3D)    
Secondary accessions: B2R7V9 Q3LR70 Q8N725 Q9H4Z1 Q9UCJ9 Q9UCL1 Q9UDK2

Explore the universe of human proteins at neXtProt for MMP9: NX_P14780

Post-translational modifications:

  • Processing of the precursor yields different active forms of 64, 67 and 82 kDa. Sequentially processing by MMP3 yields
  • the 82 kDa matrix metalloproteinase-91
  • N- and O-glycosylated1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P14780

  • 4/13 DME Specific Peptides for MMP9 (P14780) (see all 13)
     FFFSGRQ  GLLAHAF  IGNQLYL  DGYPFDG 

    MMP9 Protein expression data from MOPED and PaxDb:    About this image 
    MMP9 Protein Expression
    REFSEQ proteins: NP_004985.2  
    ENSEMBL proteins: 
     ENSP00000361405  
    Reactome Protein details: P14780
    Human Recombinant Protein Products for MMP9: 
    EMD Millipore Purified and/or Recombinant MMP9 Protein
    R&D Systems Recombinant & Natural Proteins for MMP9 (MMP-9)
    Enzo Life Sciences proteins for MMP9
    OriGene Purified Protein: MMP9
    OriGene Protein Over-expression Lysate: MMP9
    OriGene Custom Protein Services for MMP9 
    GenScript Custom Purified and Recombinant Proteins Services for MMP9
    Novus Biologicals MMP9 Proteins
    Novus Biologicals MMP9 Lysate
    Sino Biological Recombinant Protein for MMP9
    ProSpec Recombinant Protein for MMP9
    Uscn Proteins for MMP9

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005615extracellular space IDA2251898
    GO:0043234protein complex ----

    MMP9 for ontologies           About GeneDecksing



    MMP9 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of MMP9
    R&D Systems Antibodies for MMP9 (MMP-9)
    Cell Signaling Technology (CST) Antibodies for MMP9 
    OriGene Antibodies (see all 3): MMP9
    OriGene Custom Antibody Services for MMP9 
    GenScript Custom Superior Antibodies Services for MMP9
    Novus Biologicals MMP9 Antibodies
    Abcam antibodies for MMP9 
    Uscn Antibodies for MMP9
    ThermoFisher Antibody for MMP9

    Assay Products for MMP9: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    R&D Systems ELISAs for MMP9 (MMP-9)         (see first)
    R&D Systems ELISpot Kits & Development Modules for MMP9 (MMP-9)
    R&D Systems Multiplex/Array Assay Kits & Reagents for MMP9 (MMP-9)
    R&D Systems Kinase Activity Assays & Reagents for MMP9 (MMP-9)
    See all other biochemical assays at R&D Systems
    GenScript MMP9-Activity-based Protease Assay for Compound Screening
    Enzo Life Sciences assays for MMP9
    Uscn ELISAs and CLIAs for MMP9


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    MMP9 for domains           About GeneDecksing

    5/12 InterPro domains/families (see all 12):
     IPR024079 MetalloPept_cat_dom
     IPR021158 Pept_M10A_Zn_BS
     IPR021190 Pept_M10A_matrixin
     IPR000585 Hemopexin/matrixin
     IPR018486 Hemopexin/matrixin_CS

    Graphical View of Domain Structure for InterPro Entry P14780

    ProtoNet protein and cluster: P14780

    4 Blocks protein families:
    IPB000562 Type II fibronectin collagen-binding domain
    IPB000585 Hemopexin repeat
    IPB001818 Matrixin
    IPB002477 Putative peptidoglycan binding domain 1


    UniProtKB/Swiss-Prot: MMP9_HUMAN, P14780
    Domain: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the
    enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme
    Similarity: Belongs to the peptidase M10A family
    Similarity: Contains 3 fibronectin type-II domains
    Similarity: Contains 4 hemopexin-like domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MMP9_HUMAN, P14780
    Function: May play an essential role in local proteolysis of the extracellular matrix and in leukocyte migration. Could
    play a role in bone osteoclastic resorption. Cleaves KiSS1 at a Gly- -Leu bond. Cleaves type IV and type V collagen
    into large C-terminal three quarter fragments and shorter N-terminal one quarter fragments. Degrades fibronectin but
    not laminin or Pz-peptide
    Catalytic activity: Cleavage of gelatin types I and V and collagen types IV and V
    Enzyme regulation: Inhibited by histatin-3 1/24 (histatin-5). Inhibited by ECM1
    Induction: Activated by 4-aminophenylmercuric acetate and phorbol ester. Up-regulated by ARHGEF4, SPATA13 and APC via
    the JNK signaling pathway in colorectal tumor cells

         Genatlas biochemistry entry for MMP9:
    matrix metalloproteinase 9,regulator of matrix remodeling,expressed in alveolar macrophages,granulocytes and mast
    cells,generating angiostatin fragments by hydrolyzing plasminogen,key regulator of grow plate angiogenesis and
    apoptosis of hypertrophic chondrocytes in mice,playing a control role of keratinocyte growth,also involved in the
    migratory process (acute and chronic inflammation of tumoral metastatic process and in injury processus of
    myofibers),overexpressed in colorectal adenomas and in inflammatory bowel diseases,significantly diminished in diffuse
    type gastric carcinoma,involved in pathophysiology of malignant gliomas by acting in the remodeling,associated with
    neovascularization),may be also involved in the severity of coronary atherosclerosis

         Enzyme Numbers (IUBMB): EC 3.4.24.351 2 EC 3.4.242

         Gene Ontology (GO): 5/8 molecular function terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001968fibronectin binding ----
    GO:0004222metalloendopeptidase activity IDA9789069
    GO:0005515protein binding IPI--
    GO:0005518collagen binding TAS2251898
    GO:0008233peptidase activity ----
         
    MMP9 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for MMP9:
     Increased gamma-H2AX phosphory 

         15/19 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Mmp9) (see all 19):
     behavior/neurological  cardiovascular system  cellular  digestive/alimentary  growth/size 
     hematopoietic system  homeostasis/metabolism  immune system  integument  limbs/digits/tail 
     mortality/aging  muscle  nervous system  renal/urinary system  reproductive system 

    MMP9 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-outs for MMP9: Mmp9tm1Itoh Mmp9tm1Tvu Mmp9tm1Arnd Mmp9tm1Amr
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for MMP9 

    miRNA
    Products:
        
    miRTarBase miRNAs that target MMP9:
    hsa-mir-451 (MIRT005743)

    OriGene 3'-UTR Clone: MMP9
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat MMP9
    2 QIAGEN miScript miRNA Assays for microRNAs that regulate MMP9:
    hsa-miR-1224-3p hsa-miR-3713
    SwitchGear 3'UTR luciferase reporter plasmidMMP9 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for MMP9 (see all 7)
    OriGene shRNA RFP: MMP9
    OriGene siRNA: MMP9
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MMP9
    Sirion Biotech Custom design and validation of potent shRNA sequences against MMP9 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for MMP9
    Sirion Biotech Customized adenovirus for overexpression of MMP9 
    Sirion Biotech Customized adenovirus for potent knockdown of MMP9

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MMP9 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MMP9
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: MMP9 (NM_004994)
    Sino Biological Human cDNA Clone for MMP9
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for MMP9
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MMP9 

    Cell Line
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    Sirion Biotech Customized inducible overexpressing cell line services for MMP9

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MMP9


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/39 super-pathways (see all 39About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Degradation of the extracellular matrix
    Degradation of the extracellular matrix1.00
    Activation of Matrix Metalloproteinases0.40
    Degradation of collagen0.79
    2Collagen formation
    Collagen formation1.00
    Extracellular matrix organization0.54
    Assembly of collagen fibrils and other multimeric structures0.65
    3Cell adhesion_ECM remodeling
    Cell adhesion ECM remodeling1.00
    Metalloproteases in connective tissue degradation0.31
    Cell adhesion_ECM remodeling1.00
    4Integrin Pathway
    UPA-UPAR Pathway0.51
    Inhibition of Angiogenesis by TSP10.37
    Transendothelial Migration of Leukocytes0.38
    5Cell adhesion_Cell-matrix glycoconjugates
    Cell adhesion_Cell-matrix glycoconjugates1.00
    Cell adhesion Cell-matrix glycoconjugates0.97

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    3 EMD Millipore Pathways for MMP9
        Cell adhesion Cell-matrix glycoconjugates
    Cell adhesion ECM remodeling
    Metalloproteases in connective tissue degradation

    1 R&D Systems Pathway for MMP9
        A-beta Uptake & Degradation

    5/8 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for MMP9 (see all 8)
        Glioma Invasiveness
    Inhibition of Angiogenesis by TSP1
    Inhibition of Matrix Metalloproteinases
    Relaxin Pathway
    Colorectal Cancer Metastasis

    2 Cell Signaling Technology (CST) Pathways for MMP9
        Angiogenesis
    Protein Stability

    3 GeneGo (Thomson Reuters) Pathways for MMP9
        Cell adhesion Cell-matrix glycoconjugates
    Development EGFR signaling pathway
    Cell adhesion ECM remodeling

    5/18 BioSystems Pathways for MMP9 (see all 18
        Angiogenesis
    Osteopontin Signaling
    Matrix Metalloproteinases
    AGE/RAGE pathway
    IL-3 Signaling Pathway

    5/10        Reactome Pathways for MMP9 (see all 10)
        Assembly of collagen fibrils and other multimeric structures
    Collagen formation
    Degradation of collagen
    Activation of Matrix Metalloproteinases
    Extracellular matrix organization

    1 PharmGKB Pathway for MMP9
        Celecoxib Pathway, Pharmacodynamics

    3         Kegg Pathways  (Kegg details for MMP9):
        Leukocyte transendothelial migration
    Pathways in cancer
    Bladder cancer


    MMP9 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MMP9

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/79 Interacting proteins for MMP9 (P147801, 2, 3 ENSP000003614054) via UniProtKB, MINT, STRING, and/or I2D (see all 79)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    AREGP155143, ENSP000002644874I2D: score=1 STRING: ENSP00000264487
    IL8P101453, ENSP000003065124I2D: score=3 STRING: ENSP00000306512
    LCN2P801883, ENSP000002774804I2D: score=3 STRING: ENSP00000277480
    THBS2P354423, ENSP000003557514I2D: score=3 STRING: ENSP00000355751
    COL1A1P024523, ENSP000002259644I2D: score=2 STRING: ENSP00000225964
    About this table

    Gene Ontology (GO): 5/37 biological process terms (GO ID links to tree view) (see all 37):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001501skeletal system development IEA--
    GO:0001503ossification ----
    GO:0001666response to hypoxia ----
    GO:0006508proteolysis IDA2551898
    GO:0006979response to oxidative stress ----

    MMP9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    MMP9 for compounds           About GeneDecksing

    EMD Millipore small molecules for MMP9:
    Small Molecule - inhibitor
    Enzo Life Sciences drugs & compounds for MMP9

    Compounds for MMP9 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    CP 471474Broad spectrum MMP inhibitor[210755-45-6]
    MarimastatBroad spectrum MMP inhibitor[154039-60-8]
    ONO 4817Broad spectrum MMP inhibitor[223472-31-9]
    Batimastat Potent, broad spectrum MMP inhibitor [130370-60-4]
    PD 166793Broad spectrum MMP inhibitor[199850-67-4]

    3 HMDB Compounds for MMP9    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    Simvastatin(+)-Simvastatin (see all 28)79902-63-9--
    ZincZinc (see all 2)7440-66-6--
    10/140 Novoseek chemical compound relationships for MMP9 gene (see all 140)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    matrigel 86.9 112 9185711 (2), 12437074 (2), 15572024 (2), 18234959 (2) (see all 81)
    vegf 78 926 16687082 (11), 17724228 (10), 16562680 (9), 12850503 (9) (see all 99)
    (4-aminophenyl)mercuric acetate 76.8 9 7532211 (2), 11986939 (1), 8828413 (1), 15711750 (1) (see all 6)
    batimastat 69.7 5 11448065 (1), 11276015 (1), 16689658 (1), 10951238 (1) (see all 5)
    pck-3145 61.2 8 16550001 (4), 16283486 (3), 16197609 (1)
    ilomastat 60.4 9 19545667 (2), 17512742 (1), 18782669 (1), 18414015 (1)
    marimastat 60.1 13 12763661 (5), 16595036 (3), 17234180 (1), 9708737 (1)
    cgs-27023a 57.6 2 19239231 (1), 15080939 (1)
    col 3 51.8 8 12850461 (3), 16205320 (2), 11469893 (1), 17237909 (1) (see all 5)
    doxycycline 51.8 87 15667660 (7), 19128246 (4), 10664501 (4), 19442784 (3) (see all 34)

    Search CenterWatch for drugs/clinical trials and news about MMP9 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for MMP9 gene: 
    NM_004994.2  

    Unigene Cluster for MMP9:

    Matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)
    Hs.297413  [show with all ESTs]
    Unigene Representative Sequence: NM_004994
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000372330(uc002xqz.3)

    miRNA
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    OriGene 3'-UTR Clone: MMP9
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat MMP9
    2 QIAGEN miScript miRNA Assays for microRNAs that regulate MMP9:
    hsa-miR-1224-3p hsa-miR-3713
    SwitchGear 3'UTR luciferase reporter plasmidMMP9 3' UTR sequence
    Inhib. RNA
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    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for MMP9 (see all 7)
    OriGene shRNA RFP: MMP9
    OriGene siRNA: MMP9
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MMP9
    Sirion Biotech Custom design and validation of potent shRNA sequences against MMP9 
    Clone
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    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MMP9 (see all 3)
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    Additional cDNA sequence: 

    AK298246.1 AK301446.1 AK302530.1 AK303080.1 AK311648.1 AK313137.1 AK316145.1 BC006093.1 
    HQ874462.1 J05070.1 

    20 DOTS entries:

    DT.413883  DT.100024680  DT.95199801  DT.120817295  DT.120817587  DT.120817880  DT.120817870  DT.120817186 
    DT.120817482  DT.120817723  DT.120817759  DT.120817459  DT.97818783  DT.120817576  DT.100024681  DT.120817176 
    DT.92438252  DT.92438254  DT.91731953  DT.97790192 

    24/156 AceView cDNA sequences (see all 156):

    BM707830 BC006093 BP337968 BE503223 AI968368 BI833565 BU626262 BI836570 
    BQ705891 BQ706480 R53437 F09820 BQ004583 BF432443 BF341249 AW293821 
    AI860333 BM921538 BQ184382 AI954665 CK902116 AI075104 AI652329 BU733323 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    MMP9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TAAATCCCCA
    MMP9 Expression
    About this image

    MMP9 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    10/51 LifeMap In Vivo Development Anatomical Compartments/Cells (see all 51
    Tissue Anatomical Compartment CellCategory (developmental path)
    BoneAutopod Growth PlateHypertrophic ChondrocytesBone, Cartilage
    BoneCervical VertebraeHypertrophic ChondrocytesBone, Cartilage
    BoneLumbar VertebraeHypertrophic ChondrocytesBone, Cartilage
    BoneSacral VertebraeHypertrophic ChondrocytesBone, Cartilage
    BoneStylopod Growth PlateHypertrophic ChondrocytesBone, Cartilage
    BoneThoracic RibHypertrophic ChondrocytesBone, Cartilage
    BoneThoracic VertebraeHypertrophic ChondrocytesBone, Cartilage
    BoneZeugopod Growth PlateHypertrophic ChondrocytesBone, Cartilage
    BoneBone MarrowOsteoclastsBone
    LimbForelimb Dorsal MusclesMononuclear MyocytesSkeletal Muscle
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    CyT49 (Embryonic Stem Cell)Early Embryo, Inner Cell Mass

    See MMP9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for MMP9

    SOURCE GeneReport for Unigene cluster: Hs.297413

    UniProtKB/Swiss-Prot: MMP9_HUMAN, P14780
    Tissue specificity: Produced by normal alveolar macrophages and granulocytes

        SABiosciences Expression via Pathway-Focused PCR Arrays including MMP9 (see all 26): 
              Lung Cancer in human mouse rat
              Extracellular Matrix & Adhesion Molecules in human mouse rat
              Multiple Sclerosis in human mouse rat
              Wound Healing in human mouse rat
              Hypoxia Signaling Pathway in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for MMP9 gene from 6/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves MMP91 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) less 66.96(n)
    62.54(a)
      395387  NM_204667.1  NP_989998.1 
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC690802 hypothetical protein MGC69080 72.25(n)    BC057745.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufb02g062 Danio rerio cDNA clone MGC64165 IMAGE6797338, complete cds less 70.96(n)    BC053292.1 
    worm
    (Caenorhabditis elegans)
    Secernentea H36L18.16
    Protein H36L18.1
    20(a)
    possible ortholog
    X(12647047-12651417)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G450401 matrix metalloprotease domain-containing protein 52.76(n)
    44.08(a)
      819111  NM_130068.2  NP_182030.1 
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 4)
    matrixin family protein
    metalloendoproteinase 1 precursor, putative, expre...
    (see all 4)
    9(a)
    28(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    10(21890877-21896676)
    2(30974996-30977090)


    ENSEMBL Gene Tree for MMP9 (if available)
    TreeFam Gene Tree for MMP9 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for MMP9 gene
    MMP132  MMP202  MMP82  MMP142  MMP162  MMP22  MMP252  MMP242  
    MMP152  MMP112  MMP32  MMP272  MMP172  MMP102  MMP12  
    1 SIMAP similar gene for MMP9 using alignment to 1 protein entry:     MMP9_HUMAN:
    MMP2

    MMP9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/426 NCBI SNPs in MMP9 are shown (see all 426    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 20 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1214345561,2
    Cpathogenic44637567(+) CACCAA/TGAGCC 2 K M mis10--------
    rs39182571,2
    C,F--41383318(+) CCGTGT/ACTCTT 1 -- ds50019Minor allele frequency- A:0.00NS WA EU 1715
    rs60177251,2
    C--41383338(+) TCGCCC/TTGAAC 1 -- ds5001 ese31Minor allele frequency- T:0.00NA 65
    rs1998211661,2
    C,F--41383363(+) CCAACC/GACCAC 1 -- ds50011Minor allele frequency- G:0.00EU 1323
    rs2016550801,2
    C--41383466(+) CCCCCA/TCAGCT 1 -- ds50010--------
    rs1418846441,2
    C,F--41383589(+) ACCAGC/TTGTAT 1 -- nc-transcript-variant1Minor allele frequency- T:0.00NA 3674
    rs2018802151,2
    C--41383633(+) TGGATA/GCGGGA 1 -- nc-transcript-variant0--------
    rs39182581,2
    C--41383639(+) CGGGAG/AGGGGC 1 -- nc-transcript-variant2Minor allele frequency- A:0.01NS 94
    rs1851670311,2
    C--41383705(+) GAGCCC/GGTCCT 1 -- nc-transcript-variant0--------
    rs1386857041,2
    C,F--41383799(+) CAAGTG/AGCCCG 1 -- nc-transcript-variant1Minor allele frequency- A:0.00NA 4282

    HapMap Linkage Disequilibrium report for MMP9 (44637547 - 44645200 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for MMP9: --
    Human Gene Mutation Database (HGMD): MMP9

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    MMP9 for disorders           About GeneDecksing

    OMIM gene information: 120361   
    OMIM disorders: 613073  
    UniProtKB/Swiss-Prot: MMP9_HUMAN, P14780
  • Defects in MMP9 may be a cause of susceptibility to intervertebral disc disease (IDD) [MIM:603932]; also known
  • as lumbar disk herniation (LDH). IDD is one of the most common musculo-skeletal disorders and the predominant cause of
    low-back pain and unilateral leg pain
  • Defects in MMP9 are the cause of metaphyseal anadysplasia type 2 (MANDP2) [MIM:613073]. Metaphyseal
  • anadysplasia consists of an abnormal bone development characterized by severe skeletal changes that, in contrast with
    the progressive course of most other skeletal dysplasias, resolve spontaneously with age. Clinical characteristics are
    evident from the first months of life and include slight shortness of stature and a mild varus deformity of the legs.
    Patients attain a normal stature in adolescence and show improvement or complete resolution of varus deformity of the
    legs and rhizomelic micromelia

    20/417 diseases for MMP9 (see all 417):    About MalaCards
    angle-closure glaucoma    metaphyseal anadysplasia    arthritis    primary angle-closure glaucoma
    metaphyseal anadysplasia 2    spinal cord injury    internal hemorrhoid    relapsing-remitting multiple sclerosis
    hyper-ige syndrome    pigmented villonodular synovitis    toxic epidermal necrolysis    encephalomyelitis
    sorsby fundus dystrophy    lentigo maligna melanoma    open-angle glaucoma    otitis media
    hepatocellular carcinoma (fibrolamellar variant)    stevens-johnson syndrome    villonodular synovitis    middle ear cholesteatoma

    20/27 diseases from the University of Copenhagen DISEASES database for MMP9 (see all 27):
    Carcinoma     Atherosclerosis     Heart disease     Cerebrovascular accident
    Abdominal aortic aneurysm     Breast cancer     Arthritis     Lung cancer
    Brain edema     Chronic obstructive pulmonary disease     Malignant glioma     Periodontitis
    Colorectal cancer     Asthma     Prostate cancer     Hepatocellular carcinoma
    Multiple sclerosis     Hypertension     Ovarian cancer     Pancreatic cancer

    10/96 Novoseek disease relationships for MMP9 gene (see all 96)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    metastasis 81.9 868 9703281 (7), 12452001 (6), 12717827 (6), 11680936 (6) (see all 99)
    tumors 78.3 1901 14584660 (7), 10053110 (7), 10831344 (6), 11078794 (6) (see all 99)
    cancer 70 516 19141401 (5), 19360311 (5), 12600296 (4), 17034838 (3) (see all 99)
    inflammation 69.7 254 15635615 (3), 19218638 (3), 18799677 (3), 10224466 (2) (see all 99)
    atherosclerotic plaque 69.7 79 15585220 (5), 15772219 (4), 19581416 (3), 19575331 (3) (see all 43)
    necrosis 65.3 334 8045973 (2), 9917505 (2), 11306564 (2), 18710428 (2) (see all 99)
    aortic aneurysm abdominal 65.2 64 19525292 (2), 8691515 (2), 19119028 (2), 16779512 (2) (see all 37)
    fibrosarcoma 63 63 15107580 (4), 11673527 (2), 10597035 (2), 17020790 (2) (see all 40)
    atherosclerosis 58.8 84 17194891 (5), 18973519 (3), 19330590 (3), 12205736 (2) (see all 48)
    carcinoma squamous cell 58 123 19541433 (4), 10053110 (4), 12218298 (4), 7850814 (3) (see all 77)

    Genetic Association Database (GAD): MMP9
    Human Genome Epidemiology (HuGE) Navigator: MMP9 (272 documents)

    Export disorders for MMP9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for MMP9 gene, integrated from 9 sources (see all 4203):
    (articles sorted by number of sources associating them with MMP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Matrix metalloproteinase 9 (MMP-9) gene polymorphism and MMP-9 plasma levels in primary Sjogren's syndrome. (PubMed id 15316122)1, 4, 9 Hulkkonen J....Lehtimaki T. (2004)
    2. Matrix metalloproteinase3 and 9 gene promoter polymorphisms: joint action of two loci as a risk factor for coronary artery complicated plaques. (PubMed id 15823277)1, 4, 9 Pollanen P.J....Karhunen P.J. (2005)
    3. Association study of polymorphisms within matrix metalloproteinase 9 with bronchial asthma. (PubMed id 16026590)1, 4, 9 Ganter K....Heinzmann A. (2005)
    4. Mutations in MMP9 and MMP13 determine the mode of inh eritance and the clinical spectrum of metaphyseal anadysplasia. (PubMed id 19615667)1, 2, 9 Lausch E....Zabel B. (2009)
    5. Analysis of the MMP-9 (C-1562 T) and TIMP-2 (G-418C) gene promoter polymorphisms in patients with chronic periodontitis. (PubMed id 15691353)1, 4, 9 de Souza A.P....Line S.R. (2005)
    6. A single nucleotide polymorphism in the MMP-9 promoter affects tumor progression and invasive phenotype of gastric cancer. (PubMed id 15565457)1, 4, 9 Matsumura S....Yasui W. (2005)
    7. Genetic association between matrix metalloproteinase MMP-9 and MMP-3 polymorphisms and Japanese sporadic Alzheimer's disease. (PubMed id 15748780)1, 4, 9 Shibata N....Arai H. (2005)
    8. [Association of functional polymorphisms in matrix metalloproteinase-2 (MMP-2) and MMP-9 genes with risk of gastric cancer in a Chinese population.] (PubMed id 15522165)1, 4, 9 Zhang X.M....Lin D.X. (2004)
    9. Matrix metalloproteinase 3 (stromelysin) activates the precursor for the human matrix metalloproteinase 9. (PubMed id 1371271)1, 2, 9 Ogata Y.... Nagase H. (1992)
    10. Genotype-phenotype relationships in an investigation of the role of proteases in abdominal aortic aneurysm expansion. (PubMed id 16082623)1, 4, 9 Eriksson P....Powell J.T. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 4318 HGNC: 7176 AceView: MMP9 Ensembl:ENSG00000100985 euGenes: HUgn4318
    ECgene: MMP9 Kegg: 4318 H-InvDB: MMP9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for MMP9 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for MMP9 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/mmp9/
    SeattleSNPshttp://pga.gs.washington.edu/data/mmp9/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for MMP9 gene:
    Search GeneIP for patents involving MMP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

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