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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MMP3 Gene

protein-coding   GIFtS: 74
GCID: GC11M102706

matrix metallopeptidase 3 (stromelysin 1, progelatinase)

(Previous names: matrix metalloproteinase 3 (stromelysin 1, progelatinase)...)
(Previous symbols: STMY1, STMY)
 Explore 233 diseases affiliated with
MMP3 via our new
 Human Malady Compendium 
Biological research products
for MMP3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Matrix Metallopeptidase 3 (Stromelysin 1, Progelatinase)1 2     CHDS62 5
STMY11 2 3 5     STR12
STMY1 2     Proteoglycanase1
Matrix Metalloproteinase 3 (Stromelysin 1, Progelatinase)1 2     Stromelysin-11
Matrix Metalloproteinase-32 3     Transin-13
MMP-32 3     Transin-13
SL-12 3     EC 3.4.248
EC 3.4.24.173 8     

External Ids:    HGNC: 71731   Entrez Gene: 43142   Ensembl: ENSG000001499687   OMIM: 1852505   UniProtKB: P082543   

Export aliases for MMP3 gene to outside databases

Previous GC identifers: GC11M104900 GC11M104063 GC11M102695 GC11M102199 GC11M102200 GC11M102211 GC11M098634


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MMP3:
Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal
physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease
processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when
cleaved by extracellular proteinases. This gene encodes an enzyme which degrades fibronectin, laminin, collagens III,
IV, IX, and X, and cartilage proteoglycans. The enzyme is thought to be involved in wound repair, progression of
atherosclerosis, and tumor initiation. The gene is part of a cluster of MMP genes which localize to chromosome
11q22.3. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: MMP3_HUMAN, P08254
Function: Can degrade fibronectin, laminin, gelatins of type I, III, IV, and V; collagens III, IV, X, and IX, and
cartilage proteoglycans. Activates procollagenase

summary for MMP3:
Matrix metalloproteases (matrix metalloproteinase, MMPs), also called matrixins, are zinc-dependent
endopeptidases that are the major proteases involved in ECM degradation. MMPs are capable of degrading a
wide range of extracellular molecules and a number of bioactive molecules. 24 matrixin genes have been
identified in humans, which can be organized into six groups based on domain organization and substrate
preference: Collagenases (MMP-1, -8 and -13), Gelatinases (MMP-2 and MMP-9), Stromelysins (MMP-3, -10 and
-11), Matrilysin (MMP-7 and MMP-26), Membrane-type (MT)-MMPs (MMP-14, -15, -16, -17, -24 and -25) and others
(MMP-12, -19, -20, -21, -23, -27 and -28). MMP activity is regulated by two major endogenous inhibitors:
alpha2-macroglobulin and tissue inhibitors of metalloproteases (TIMPs). MMPs play a central role in cell
proliferation, migration, differentiation, angiogenesis, apoptosis and host defences. Dysregulatoin of MMPs
has been implicated in many diseases including arthritis, chronic ulcers, encephalomyelitis and cancer.
Tumour metastasis is a multistep process involving the dessemination of tumor cells from the primary tumor
to secondarys at a distant organ or tissue. One of the first steps in metastasis is the degradation of the
basement membrane, a process in which MMPs have been implicated. MMPs are secreted by tumor cells themselves
or by surrounding stromal cells stimulated by the nearby tumor. Numerous studies have linked altered MMP
expression in different human cancers with poor disease prognosis. MMP-1, -2, -3, -7, -9, -13 and -14 all
have elevated expression in primary tumors and/or metastases. Synthetic or natural inhibitors of MMPs result
in inhibition of metastasis, while up-regulation of MMPs led to enhanced cancer cell invasion.

Gene Wiki entry for MMP3


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_033899.8  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MMP3 gene promoter:
         SRF   Sox5   AP-1   SRF (504 AA)   HNF-1A   SRY   HNF-1   STAT3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMMP3 promoter sequence
   Search SABiosciences Chromatin IP Primers for MMP3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MMP3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q22.3   Ensembl cytogenetic band:  11q22.2   HGNC cytogenetic band: 11q22.3

MMP3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MMP3 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M102706:  view genomic region     (about GC identifiers)

Start:
102,706,528 bp from pter      End:
102,714,534 bp from pter
Size:
8,007 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MMP3_HUMAN, P08254 (See protein sequence)
Recommended Name: Stromelysin-1 precursor  
Size: 477 amino acids; 53977 Da
Cofactor: Binds 4 calcium ions per subunit
Cofactor: Binds 2 zinc ions per subunit
Subcellular location: Secreted, extracellular space, extracellular matrix (Probable)
6/38 PDB 3D structures from and Proteopedia for MMP3 (see all 38):
1B3D (3D)        1B8Y (3D)        1BIW (3D)        1BM6 (3D)        1BQO (3D)        1C3I (3D)    
Secondary accessions: B2R8B8 Q3B7S0 Q6GRF8

Explore the universe of human proteins at neXtProt for MMP3: NX_P08254

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P08254

  • 4/13 DME Specific Peptides for MMP3 (P08254) (see all 13)
     HSLGLFH  GEADIMI  FWRKSLR  GIQSLYG 

    MMP3 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_002413.1  
    ENSEMBL proteins: 
     ENSP00000299855   ENSP00000398346   ENSP00000435255  
    Reactome Protein details: P08254
    Human Recombinant Protein Products: 
    EMD Millipore Purified and/or Recombinant MMP3 Protein
    R&D Systems Recombinant & Natural Proteins for MMP3 (MMP-3)
    Enzo Life Sciences proteins for MMP3
    OriGene Purified Protein: MMP3
    OriGene Protein Over-expression Lysate: MMP3
    OriGene Custom Protein Services for MMP3 
    GenScript Custom Purified and Recombinant Proteins Services for MMP3
    Novus Biologicals MMP3 Proteins
    Novus Biologicals MMP3 Lysates
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for MMP3
    Uscn Proteins for MMP3

    Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005615extracellular space TAS3360803
    GO:0005634nucleus ----
    GO:0030425dendrite ----


    MMP3 for ontologies           About GeneDecksing



    MMP3 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of MMP3
    R&D Systems Antibodies for MMP3 (MMP-3)
    OriGene Antibodies: MMP3
    OriGene Custom Antibody Services for MMP3 
    GenScript Custom Superior Antibodies Services for MMP3
    Novus Biologicals MMP3 Antibodies
    Abcam antibodies for MMP3 
    Uscn Antibodies for MMP3
    ThermoFisher Antibody for MMP3

    Assay Products for MMP3: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    R&D Systems ELISAs for MMP3 (MMP-3)         (see all)
    GenScript MMP3-Activity-based Protease Assay for Compound Screening
    Enzo Life Sciences assays for MMP3
    Uscn ELISAs and CLIAs for MMP3


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    MMP3 for domains           About GeneDecksing

    5/10 InterPro domains/families (see all 10):
     IPR024079 MetalloPept_cat_dom
     IPR021158 Pept_M10A_Zn_BS
     IPR021190 Pept_M10A_matrixin
     IPR000585 Hemopexin/matrixin
     IPR018486 Hemopexin/matrixin_CS

    Graphical View of Domain Structure for InterPro Entry P08254

    ProtoNet protein and cluster: P08254

    3 Blocks protein families:
    IPB000585 Hemopexin repeat
    IPB001818 Matrixin
    IPB002477 Putative peptidoglycan binding domain 1


    UniProtKB/Swiss-Prot: MMP3_HUMAN, P08254
    Domain: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the
    enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme
    Similarity: Belongs to the peptidase M10A family
    Similarity: Contains 4 hemopexin-like domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: MMP3_HUMAN, P08254
    Function: Can degrade fibronectin, laminin, gelatins of type I, III, IV, and V; collagens III, IV, X, and IX, and
    cartilage proteoglycans. Activates procollagenase
    Catalytic activity: Preferential cleavage where P1', P2' and P3' are hydrophobic residues

         Genatlas biochemistry entry for MMP3:
    matrix metalloproteinase 3,regulator of matrix remodeling,component of MMP cluster,expressed in the developing
    bone,interacting with ZBP89,playing a role in tumor metastasis

    Enzyme Numbers (IUBMB): EC 3.4.24.171 2 EC 3.4.242

    miRNA
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    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat MMP3
    1 QIAGEN miScript miRNA Assays for microRNA that regulate MMP3:
    hsa-miR-146b-3p
    SwitchGear 3'UTR luciferase reporter plasmidMMP3 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for MMP3 (see all 7)
    OriGene shRNA RFP: MMP3
    OriGene siRNA: MMP3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MMP3

    Gene Editing
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    DNA2.0 Custom Protein Engineering Service for MMP3

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MMP3 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MMP3
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: MMP3 (NM_002422)
    Sino Biological Human cDNA Clone for MMP3
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for MMP3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MMP3 

    Cell Line
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    GenScript Custom overexpressing Cell Line Services for MMP3
    Search LifeMap BioReagents cell lines for MMP3

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MMP3

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004222metalloendopeptidase activity IEA--
    GO:0005509calcium ion binding IEA--
    GO:0008270zinc ion binding IEA--
    GO:0032403protein complex binding ----


    MMP3 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for MMP3:
     Decreased circadian period len  Increased HPV18 LCR reporter a 

    Animal Models:
         Mouse knock-out Mmp3tm1Mrl for MMP3
         4 MGI mutant phenotypes (inferred from 1 allele(MGI details for Mmp3):
     homeostasis/metabolism  immune system  nervous system  skeleton 

    MMP3 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/16 super-pathways (see all 16About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Degradation of the extracellular matrix
    Degradation of the extracellular matrix1.00
    Activation of Matrix Metalloproteinases0.40
    Degradation of collagen0.79
    2Collagen formation
    Collagen formation1.00
    Extracellular matrix organization0.54
    Assembly of collagen fibrils and other multimeric structures0.65
    3Cell adhesion_ECM remodeling
    Cell adhesion ECM remodeling1.00
    Metalloproteases in connective tissue degradation0.31
    Cell adhesion_ECM remodeling1.00
    4G-protein signaling_Ras family GTPases in kinase cascades (scheme)
    Immune response Oncostatin M signaling via MAPK in human cells0.39
    Oncostatin M Signaling Pathway0.15
    Immune response_Oncostatin M signaling via MAPK in human cells0.39
    5Cell adhesion_Cell-matrix glycoconjugates
    Cell adhesion_Cell-matrix glycoconjugates1.00
    Cell adhesion Cell-matrix glycoconjugates0.97

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    4 EMD Millipore Pathways for MMP3
        Cell adhesion Cell-matrix glycoconjugates
    Cell adhesion ECM remodeling
    Immune response Oncostatin M signaling via MAPK in human cells
    Metalloproteases in connective tissue degradation

    4 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for MMP3
        Inhibition of Matrix Metalloproteinases
    Transendothelial Migration of Leukocytes
    UPA-UPAR Pathway
    Pancreatic Adenocarcinoma

    3 GeneGo (Thomson Reuters) Pathways for MMP3
        Cell adhesion Cell-matrix glycoconjugates
    Cell adhesion ECM remodeling
    Immune response Oncostatin M signaling via MAPK in human cells

    3 BioSystems Pathways for MMP3 
        Oncostatin M Signaling Pathway
    Matrix Metalloproteinases
    p75(NTR)-mediated signaling

    5/13        Reactome Pathways for MMP3 (see all 13)
        Assembly of collagen fibrils and other multimeric structures
    Gastrin-CREB signalling pathway via PKC and MAPK
    Signaling by GPCR
    EGFR Transactivation by Gastrin
    Collagen formation


    1         Kegg Pathway  (Kegg details for MMP3):
        Rheumatoid arthritis


    MMP3 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MMP3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/37 Interacting proteins for MMP3 (P082542, 3 ENSP000002998554) via UniProtKB, MINT, STRING, and/or I2D (see all 37)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SPOCK3Q9BQ163, ENSP000003501534I2D: score=2 STRING: ENSP00000350153
    CCL2P135003, ENSP000002258314I2D: score=1 STRING: ENSP00000225831
    CCL7P800983, ENSP000002003074I2D: score=1 STRING: ENSP00000200307
    DCNP075853, ENSP000000527544I2D: score=1 STRING: ENSP00000052754
    HAPLN1P109153, ENSP000002743414I2D: score=1 STRING: ENSP00000274341
    About this table

    Gene Ontology (GO): 5/16 biological process terms (GO ID links to tree view) (see all 16):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001666response to hypoxia ----
    GO:0006508proteolysis IEA--
    GO:0007565female pregnancy ----
    GO:0022617extracellular matrix disassembly TAS--
    GO:0030198extracellular matrix organization TAS--


    MMP3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    MMP3 for compounds           About GeneDecksing

    EMD Millipore small molecules for MMP3:
    Small Molecule - inhibitor
    Enzo Life Sciences drugs & compounds for MMP3

    Compounds for MMP3 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    MarimastatBroad spectrum MMP inhibitor[154039-60-8]
    ONO 4817Broad spectrum MMP inhibitor[223472-31-9]
    Batimastat Potent, broad spectrum MMP inhibitor [130370-60-4]
    PD 166793Broad spectrum MMP inhibitor[199850-67-4]
    UK 370106Highly selective MMP-3 and MMP-12 inhibitor[230961-21-4]

    2 HMDB Compounds for MMP3    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--
    Simvastatin(+)-Simvastatin (see all 28)79902-63-9--

    10/22 DrugBank Compounds for MMP3 (see all 22)    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    1-Benzyl-3-(4-Methoxy-Benzenesulfonyl)-6-Oxo-Hexahydro-Pyrimidine-4-Carboxylic Acid Hydroxyamide-- --target--17139284 17016423 10592235
    5-Methyl-5-(4-Phenoxy-Phenyl)-Pyrimidine-2,4,6-Trione-- --target--17139284 17016423 10592235
    A Disubstituted Succinyl Caprolactam Hydroxymate Mmp3inhibitor-- --target--17139284 17016423 10592235
    N-Hydroxy-1-(4-Methoxyphenyl)Sulfonyl-4-Benzyloxycarbonyl-Piperazine-2-Carboxamide-- --target--17139284 17016423 10592235
    N-Hydroxy-4-[(4-Methoxylphenyl)Sulfonyl]-2,2-Dimethyl-Hexahydro-1,4-Thiazepine-3(S)-Carboxamide-- --target--17139284 17016423 10592235
    R-2-{[4'-Methoxy-(1,1'-Biphenyl)-4-Yl]-Sulfonyl}-Amino-6-Methoxy-Hex-4-Ynoic Acid-- --target--17139284 17016423 10592235
    (1n)-4-N-Butoxyphenylsulfonyl-(2r)-N-Hydroxycarboxamido-(4s)-Methanesulfonylamino-Pyrrolidine-- --target--17139284 17016423
    1-Methyloxy-4-Sulfone-Benzene-- --target--17139284 17016423
    3-(1h-Indol-3-Yl)-2-[4-(4-Phenyl-Piperidin-1-Yl)-Benzenesulfonylamino]-Propionic Acid-- --target--17139284 17016423
    3-Methylpyridine-- 108-99-6target--17139284 17016423

    10/120 Novoseek chemical compound relationships for MMP3 gene (see all 120)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    (4-aminophenyl)mercuric acetate 84.3 20 2383557 (3), 8195131 (1), 9930993 (1), 2176865 (1) (see all 10)
    n-isobutyl-n-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid 76.8 6 12841876 (1), 19834065 (1), 15814801 (1)
    ilomastat 68.3 1 14611841 (1)
    hydroxamate 56.2 7 16603129 (2), 18029177 (1), 10521266 (1)
    pge2 48 87 15948687 (6), 14981131 (4), 17214881 (4), 19835666 (4) (see all 30)
    matrigel 47.7 6 11419692 (4), 12379519 (1), 20188714 (1)
    infliximab 46.7 29 17156669 (4), 17552048 (2), 19357521 (2), 15478146 (2) (see all 15)
    vegf 43.5 94 15571312 (6), 15455259 (5), 18363112 (5), 11308991 (4) (see all 41)
    latanoprost 42.2 13 11027004 (4), 14638715 (2), 18971237 (2), 16505029 (2) (see all 6)
    keratan sulfate 40.9 6 9920023 (1), 14613270 (1), 12202124 (1), 7719956 (1)

    Search CenterWatch for drugs/clinical trials and news about MMP3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for MMP3 gene: 
    NM_002422.3  

    Unigene Cluster for MMP3:

    Matrix metallopeptidase 3 (stromelysin 1, progelatinase)
    Hs.375129  [show with all ESTs]
    Unigene Representative Sequence: AK223291
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000299855(uc001phj.1) ENST00000434103 ENST00000524478

    miRNA
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    1 QIAGEN miScript miRNA Assays for microRNA that regulate MMP3:
    hsa-miR-146b-3p
    SwitchGear 3'UTR luciferase reporter plasmidMMP3 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for MMP3 (see all 7)
    OriGene shRNA RFP: MMP3
    OriGene siRNA: MMP3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat MMP3
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for MMP3 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MMP3
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: MMP3 (NM_002422)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for MMP3
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MMP3 
    Primer
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    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for MMP3
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat MMP3
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat MMP3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MMP3

    Additional cDNA sequence: 

    AK223283.1 AK223291.1 AK313310.1 BC069676.1 BC069716.1 BC074815.2 BC074869.2 BC105954.1 
    BC107490.1 BC107491.1 DQ399598.1 J03209.1 X05232.1 

    10 DOTS entries:

    DT.313463  DT.120702923  DT.99997921  DT.99940879  DT.100035204  DT.100651118  DT.120702977  DT.120702989 
    DT.99999491  DT.106379 

    24/209 AceView cDNA sequences (see all 209):

    BQ181107 AA535129 CF126566 BC074815 BQ771783 AW291450 CA430963 BQ182789 
    CD365864 CD614797 CA413861 CF132244 CN479902 CA414582 CA412479 BU623701 
    C02073 BQ019029 BM988940 BM991379 BG928156 BP346005 BP345369 BP345500 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    MMP3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAGCCAGGCT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    MMP3 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    6 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    AdiposeVascular AdiposeStromal Vascular Preadipocyte Progenitor CellsAdipose
    CartilageCervical Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    CartilageLumbar Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    CartilageSacral Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    CartilageThoracic Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    HeartMyocardiumMature Cardiac FibroblastsEpicardium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    PureStem™ progenitor E44 (Embryonic Progenitor Cell)

    See MMP3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for MMP3

    SOURCE GeneReport for Unigene cluster: Hs.375129
        SABiosciences Expression via Pathway-Focused PCR Arrays including MMP3 (see all 7): 
              Fibrosis in human mouse rat
              Extracellular Matrix & Adhesion Molecules in human mouse rat
              Th17 Response in human mouse rat
              Atherosclerosis in human mouse rat
              Epithelial to Mesenchymal Transition (EMT) in human mouse rat

    Primer
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for MMP3 gene from 7/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves LOC4280861 stromelysin-1-like 62.3(n)
    54.12(a)
      428086  XM_425644.3  XP_425644.3 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 4)
    --
    55(a)
    52(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    3(192100693-192114354)
    3(192049443-192058710)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia CF218175.12   -- 71.85(n)    CF218175.1 
    zebrafish
    (Danio rerio)
    Actinopterygii mmp13a6
    mmp16a6
    matrix metallopeptidase 16a (membrane-inserted)
    44(a)
    21(a)
    1 ↔ many
    possible ortholog
    10(39959934-39979810)
    24(32795678-32875906)
    worm
    (Caenorhabditis elegans)
    Secernentea C31B8.83   -- 44(a)   V(2905685-2909407)   --
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G450406
    AT1G599706
    (see all 5)
    matrix metalloprotease domain-containing protein
    (see all 5)
    27(a)
    26(a)
    (see all 5)
    many ↔ many
    many ↔ many
    (see all 5)
    2(18577650-18578914)
    1(22073534-22074876)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 4)
    matrixin family protein
    metalloendoproteinase 1 precursor, putative, expre...
    (see all 4)
    8(a)
    25(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    10(21890877-21896676)
    10(21883516-21885765)


    ENSEMBL Gene Tree for MMP3 (if available)
    TreeFam Gene Tree for MMP3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for MMP3 gene
    MMP132  MMP202  MMP82  MMP142  MMP92  MMP162  MMP22  MMP252  
    MMP242  MMP152  MMP112  MMP272  MMP172  MMP102  MMP12  
    17 SIMAP similar genes for MMP3 using alignment to 4 protein entries:     MMP3_HUMAN (see all proteins):
    MMP10    MMP1    MMP12    MMP8    MMP13    MMP27
    MMP20    MMP7    MMP2    MMP17    MMP16    MMP24
    MMP26    MMP11    MMP14    MMP15    MMP25

    MMP3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/225 NCBI SNPs in MMP3 are shown (see all 225    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs30250801,2
    C,F,O,H,--98634150(-) CAAATT/CGCCTT 1 -- ds500115Minor allele frequency- C:0.02NS EA NA WA 1442
    rs1133798611,2
    --98634435(+) AAACAG/AACAAA 1 -- ds50011Minor allele frequency- A:0.50CSA 2
    rs30250791,2
    C,F,H,--98634626(-) TTGCCG/AGTCAT 1 -- ut3116Minor allele frequency- A:0.05NS EA NA CSA WA 1440
    rs18928751,2
    C,F,H,--98634645(+) TTCACG/ACTCAA 1 -- ut3118Minor allele frequency- A:0.02NS EA NA WA 1724
    rs30250781,2
    C,F--98634665(-) CGAGTC/TACACT 1 -- ut31 ese34Minor allele frequency- T:0.02NS NA 90
    rs30250771,2
    C,F,H,--98634979(-) ataaaC/TACTTT 1 -- int18Minor allele frequency- T:0.03NS EA NA WA 612
    rs768220871,2
    --98635248(+) CACTTG/CCTTGG 1 -- int11Minor allele frequency- C:0.01EA 120
    rs6764821,2
    H--98635439(-) GATTTT/GGTTTT 1 -- int17Minor allele frequency- G:0.00EA NA NS 426
    rs30161981,2
    H--98635457(+) TTTTTT/AAAACT 1 -- int1 trp34Minor allele frequency- A:0.00NS EA 418
    rs30250951,2
    C,F,H--98636333(-) GAAAGA/GTGATT 1 -- int18Minor allele frequency- G:0.00NS EA NA 510

    HapMap Linkage Disequilibrium report for MMP3 (102706528 - 102714534 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for MMP3: --
    Human Gene Mutation Database (HGMD): MMP3

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MMP3
    DNA2.0 Custom Variant and Variant Library Synthesis for MMP3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    MMP3 for disorders           About GeneDecksing

    OMIM gene information: 185250    OMIM disorders: --

    UniProtKB/Swiss-Prot: MMP3_HUMAN, P08254
  • Defects in MMP3 are the cause of susceptibility to coronary heart disease type 6 (CHDS6) [MIM:614466]. A
  • multifactorial disease characterized by an imbalance between myocardial functional requirements and the capacity of
    the coronary vessels to supply sufficient blood flow. Decreased capacity of the coronary vessels is often associated
    with thickening and loss of elasticity of the coronary arteries. Note=A polymorphism in the MMP3 promoter region is
    associated with the risk of coronary heart disease and myocardial infarction, due to lower MMP3 proteolytic activity
    and higher extracellular matrix deposition in atherosclerotic lesions

    20/233 diseases for MMP3 (see all 233):    About MalaCards
    arthritis    recessive dystrophic epidermolysis bullosa    superior limbic keratoconjunctivitis    alpha 1-antitrypsin deficiency
    atherosclerosis    epidermolysis bullosa    prinzmetal angina    adult-onset still's disease
    lumbar disc degeneration    hyper-ige syndrome    sorsby fundus dystrophy    encephalomyelitis
    mitral valve prolapse    frozen shoulder    osteochondritis dissecans    cleft lip/palate
    spinal stenosis    bile duct cancer    chronic venous leg ulcers    coronary heart disease

    5 diseases from the University of Copenhagen DISEASES database for MMP3:
    Arthritis     Vascular disease     Synovitis     Periodontal disease
    Heart disease

    10/97 Novoseek disease relationships for MMP3 gene (see all 97)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    rheumatoid arthritis 79.1 160 17425385 (6), 11928230 (3), 2057724 (2), 10556259 (2) (see all 87)
    osteoarthritis 78.1 54 2057724 (3), 17425385 (3), 11136879 (3), 9128417 (2) (see all 34)
    arthritis 65.7 59 12202124 (2), 17703334 (2), 7699637 (2), 11796404 (2) (see all 34)
    necrosis 60.9 106 2057724 (3), 8045973 (2), 7921541 (2), 16488289 (2) (see all 76)
    tumors 56 225 15466188 (5), 17922906 (3), 15750195 (3), 2057724 (2) (see all 99)
    synovitis 54.9 16 17425385 (3), 17918786 (2), 15457463 (2), 11928230 (1) (see all 6)
    inflammation 54.5 60 7612046 (2), 10371277 (2), 11084020 (1), 17319946 (1) (see all 45)
    conjunctivochalasis 51.7 10 10670469 (5), 10967046 (2), 20019361 (2)
    spondylitis ankylosing 48.5 22 15478146 (3), 17156669 (2), 11796404 (2), 18674944 (2) (see all 9)
    atherosclerotic plaque 48.3 15 19656094 (1), 19948979 (1), 19542470 (1), 16238676 (1) (see all 10)

    Genetic Association Database (GAD): MMP3
    Human Genome Epidemiology (HuGE) Navigator: MMP3 (253 documents)

    Export disorders for MMP3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for MMP3 gene, integrated from 9 sources (see all 1684):
    (articles sorted by number of sources associating them with MMP3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the risk of myocardial infarction from polymorphisms in candidate genes. (PubMed id 12477941)1, 2, 4 Yamada Y....Yokota M. (2002)
    2. Serum matrix metalloproteinase-3 concentration is influenced by MMP-3 -1612 5A/6A promoter genotype and associated with myocardial infarction. (PubMed id 16238676)1, 4, 9 Samnegard A....Eriksson P. (2005)
    3. Coronary artery calcification is related to functional polymorphism of matrix metalloproteinase 3: the Helsinki Sudden Death Study. (PubMed id 12204805)1, 4, 9 Pollanen P.J....Karhunen P.J. (2002)
    4. The function of the SNP in the MMP1 and MMP3 promoter in susceptibility to endometriosis in China. (PubMed id 15879464)1, 4, 9 Shan K....Yan L. (2005)
    5. The 5A6A polymorphism in the promoter of the stromelysin-1 (MMP3) gene as a risk factor for restenosis. (PubMed id 11977998)1, 4, 9 Humphries S....Amouyel P. (2002)
    6. Matrix metalloproteinase3 and 9 gene promoter polymorphisms: joint action of two loci as a risk factor for coronary artery complicated plaques. (PubMed id 15823277)1, 4, 9 Pollanen P.J....Karhunen P.J. (2005)
    7. Association of functional gene polymorphisms of matrix metalloproteinase (MMP)-1, MMP-3 and MMP-9 with the progression of chronic liver disease. (PubMed id 15955221)1, 4, 9 Okamoto K....Yuasa I. (2005)
    8. [Association of single nucleotide polymorphism in matrix metalloproteinases promoter with susceptibility to ovarian cancer] (PubMed id 16080875)1, 4, 9 Li Y....Fang S.M. (2005)
    9. Matrix metalloproteinase-1 and -3 gene promoter polymorphisms in Japanese patients with periodontitis. (PubMed id 15312099)1, 4, 9 Itagaki M....Yamazaki K. (2004)
    10. Association of a specific haplotype across the genes MMP1 and MMP3 with radiographic joint destruction in rheumatoid arthritis. (PubMed id 15142265)1, 4, 9 Dorr S....Keyszer G. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 4314 HGNC: 7173 AceView: MMP3 Ensembl:ENSG00000149968 euGenes: HUgn4314
    ECgene: MMP3 Kegg: 4314 H-InvDB: MMP3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for MMP3 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for MMP3 Genetics and Cytogenetics in Oncology and Haematology
    SeattleSNPshttp://pga.gs.washington.edu/data/mmp3/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for MMP3 gene:
    Search GeneIP for patents involving MMP3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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    About This Section

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