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Aliases for MMP24OS Gene

Aliases for MMP24OS Gene

  • MMP24 Opposite Strand 2 3 5
  • MMP24 Antisense RNA 1 2 3
  • MMP24-AS1 3

External Ids for MMP24OS Gene

Previous HGNC Symbols for MMP24OS Gene

  • MMP24-AS1

Summaries for MMP24OS Gene

GeneCards Summary for MMP24OS Gene

MMP24OS (MMP24 Opposite Strand) is a Protein Coding gene. Diseases associated with MMP24OS include Retinitis Pigmentosa 11.

Additional gene information for MMP24OS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MMP24OS Gene

Genomics for MMP24OS Gene

GeneHancer (GH) Regulatory Elements for MMP24OS Gene

Promoters and enhancers for MMP24OS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I035275 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 568.9 -0.2 -153 5 HDGF ATF1 SIN3A ZNF48 ETS1 POLR2B GLIS2 ZNF143 KLF7 ATF7 MMP24OS GC20M035279 GC20M035276 ENSG00000261582 EIF6 FAM83C MMP24
GH20I035146 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 10.8 +130.5 130517 2.9 HDGF MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 EDEM2 RBM12 NCOA6 ENSG00000201151 MMP24 ERGIC3 MMP24OS PROCR PIGU EIF6
GH20I035250 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 18.8 +26.3 26286 3.7 MEIS2 PKNOX1 ZBTB6 ZNF449 TAL1 EBF1 ZIC2 TCF12 CBFA2T2 PRDM10 MMP24 MMP24OS CEP250 EDEM2 LOC102725201 RBM39 SPAG4 ENSG00000279253 GC20M035263
GH20I035317 Enhancer 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.1 -41.6 -41591 5.1 PKNOX1 FOXA2 ARNT FEZF1 FOS SP3 MIER3 ZNF610 ZSCAN16 GLIS1 UQCC1 EIF6 FAM83C MMP24 FAM83C-AS1 MMP24OS NCOA6 EDEM2 RBM12 MIR499A
GH20I035170 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 11 +106.1 106051 2.3 SIN3A YBX1 TCF12 ZNF121 GLIS2 GATA2 ZNF263 SP3 REST SMARCB1 PROCR RBM12 RBM39 CPNE1 ERGIC3 RPL36P4 TRPC4AP EDEM2 MMP24OS ENSG00000278367
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MMP24OS on UCSC Golden Path with GeneCards custom track

Genomic Locations for MMP24OS Gene

Genomic Locations for MMP24OS Gene
chr20:35,201,745-35,278,157
(GRCh38/hg38)
Size:
76,413 bases
Orientation:
Minus strand
chr20:33,804,265-33,865,934
(GRCh37/hg19)

Genomic View for MMP24OS Gene

Genes around MMP24OS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MMP24OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MMP24OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MMP24OS Gene

Proteins for MMP24OS Gene

  • Protein details for MMP24OS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RRL7
    Recommended name:
    MMP24 opposite strand
    Protein Accession:
    A0A0U1RRL7

    Protein attributes for MMP24OS Gene

    Size:
    71 amino acids
    Molecular mass:
    7680 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MMP24OS Gene

Post-translational modifications for MMP24OS Gene

No Post-translational modifications

Other Protein References for MMP24OS Gene

No data available for DME Specific Peptides for MMP24OS Gene

Domains & Families for MMP24OS Gene

Gene Families for MMP24OS Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for MMP24OS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MMP24OS: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MMP24OS Gene

Function for MMP24OS Gene

Phenotypes From GWAS Catalog for MMP24OS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MMP24OS Gene

Localization for MMP24OS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MMP24OS Gene

Pathways & Interactions for MMP24OS Gene

SuperPathways for MMP24OS Gene

No Data Available

Interacting Proteins for MMP24OS Gene

Gene Ontology (GO) - Biological Process for MMP24OS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MMP24OS Gene

Drugs & Compounds for MMP24OS Gene

No Compound Related Data Available

Transcripts for MMP24OS Gene

mRNA/cDNA for MMP24OS Gene

(2) REFSEQ mRNAs :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MMP24OS Gene

No ASD Table

Relevant External Links for MMP24OS Gene

GeneLoc Exon Structure for
MMP24OS
ECgene alternative splicing isoforms for
MMP24OS

Expression for MMP24OS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MMP24OS Gene

Orthologs for MMP24OS Gene

Evolution for MMP24OS Gene

ENSEMBL:
Gene Tree for MMP24OS (if available)
TreeFam:
Gene Tree for MMP24OS (if available)

No data available for Orthologs for MMP24OS Gene

Paralogs for MMP24OS Gene

No data available for Paralogs for MMP24OS Gene

Variants for MMP24OS Gene

Sequence variations from dbSNP and Humsavar for MMP24OS Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000542184 -- 35,277,938(-) A/G intron_variant
rs1000587713 -- 35,277,647(-) G/A non_coding_transcript_variant
rs1001766559 -- 35,277,360(-) G/A non_coding_transcript_variant
rs1002111141 -- 35,277,595(-) C/A non_coding_transcript_variant
rs1003089548 -- 35,278,409(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MMP24OS Gene

Variant ID Type Subtype PubMed ID
nsv1059168 CNV loss 25217958
nsv585943 CNV loss 21841781

Additional Variant Information for MMP24OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MMP24OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MMP24OS Gene

Disorders for MMP24OS Gene

MalaCards: The human disease database

(1) MalaCards diseases for MMP24OS Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MMP24OS

genes like me logo Genes that share disorders with MMP24OS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MMP24OS Gene

Publications for MMP24OS Gene

  1. Viral Infection Identifies Micropeptides Differentially Regulated in smORF-Containing lncRNAs. (PMID: 28825667) Razooky BS … Tarakhovsky A (Genes 2017) 3 58
  2. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N … Mountain J (PLoS genetics 2010) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  5. Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines. (PMID: 29474001) Lee SE … Kim MS (Proteomics 2018) 3

Products for MMP24OS Gene

Sources for MMP24OS Gene

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