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Aliases for MMP24-AS1 Gene

Subcategory (RNA class) for MMP24-AS1 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for MMP24-AS1 Gene

  • MMP24 Antisense RNA 1 2 3 5

External Ids for MMP24-AS1 Gene

Previous GeneCards Identifiers for MMP24-AS1 Gene

  • GC20M033804

Summaries for MMP24-AS1 Gene

GeneCards Summary for MMP24-AS1 Gene

MMP24-AS1 (MMP24 Antisense RNA 1) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MMP24-AS1 Gene

Genomics for MMP24-AS1 Gene

Regulatory Elements for MMP24-AS1 Gene

Enhancers for MMP24-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F035275 0.6 ENCODE 18.9 -0.2 -153 5.0 HDGF ATF1 SIN3A ZNF48 GLIS2 ZNF143 KLF7 PAF1 SP3 MIER2 EIF6 MMP24-AS1 FAM83C GC20M035279
GH20F035049 0.4 ENCODE 18.9 +228.2 228171 0.8 FOXA3 NCOA6 MMP24-AS1 MIR499A ENSG00000201151 EDEM2 MMP24 RNU6-407P PIR41538
GH20F035250 1.2 FANTOM5 Ensembl ENCODE 18.8 +26.3 26287 3.7 CTCF ESRRA PKNOX1 TAL1 ZNF2 ZIC2 RAD21 YY1 GATA3 TRIM24 MMP24 MMP24-AS1 CEP250 EDEM2 LOC102725201 RBM39 SPAG4 ENSG00000279253 GC20M035263
GH20F035337 0.6 Ensembl ENCODE 18.7 -61.3 -61258 3.2 CTCF BHLHE40 CEBPB REST ZNF121 ZFHX2 RAD51 JUND ZNF341 GLIS1 UQCC1 MMP24-AS1 FAM83C EIF6 FAM83C-AS1 GDF5OS
GH20F035119 0.9 Ensembl ENCODE 17.8 +157.9 157888 1.4 HDGF ATF1 PKNOX1 ARNT GTF3C2 GATA2 FOS JUNB NCOA1 CREB3 NCOA6 MMP24-AS1 RBM12 EIF6 RPL36P4 TRPC4AP CPNE1 EDEM2 MMP24 PIGU
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MMP24-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for MMP24-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000400256 457 1401 HDGF TBP ATF1 ZNF76 SIN3A RAD21 ZNF48 GLIS2 ZNF366 SCRT2

Genomic Location for MMP24-AS1 Gene

Chromosome:
20
Start:
35,201,745 bp from pter
End:
35,278,157 bp from pter
Size:
76,413 bases
Orientation:
Minus strand

Genomic View for MMP24-AS1 Gene

Genes around MMP24-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MMP24-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MMP24-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MMP24-AS1 Gene

Proteins for MMP24-AS1 Gene

  • Protein details for MMP24-AS1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RRL7
    Recommended name:
    Protein MMP24-AS1
    Protein Accession:
    A0A0U1RRL7

    Protein attributes for MMP24-AS1 Gene

    Size:
    71 amino acids
    Molecular mass:
    7680 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MMP24-AS1 Gene

Post-translational modifications for MMP24-AS1 Gene

No Post-translational modifications

Other Protein References for MMP24-AS1 Gene

No data available for DME Specific Peptides for MMP24-AS1 Gene

Domains & Families for MMP24-AS1 Gene

Protein Domains for MMP24-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MMP24-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MMP24-AS1 Gene

Function for MMP24-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MMP24-AS1 Gene

Localization for MMP24-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MMP24-AS1 Gene

Pathways & Interactions for MMP24-AS1 Gene

SuperPathways for MMP24-AS1 Gene

No Data Available

Interacting Proteins for MMP24-AS1 Gene

Gene Ontology (GO) - Biological Process for MMP24-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MMP24-AS1 Gene

Transcripts for MMP24-AS1 Gene

mRNA/cDNA for MMP24-AS1 Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MMP24-AS1 Gene

No ASD Table

Relevant External Links for MMP24-AS1 Gene

GeneLoc Exon Structure for
MMP24-AS1
ECgene alternative splicing isoforms for
MMP24-AS1

Expression for MMP24-AS1 Gene

mRNA expression in normal human tissues for MMP24-AS1 Gene

genes like me logo Genes that share expression patterns with MMP24-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MMP24-AS1 Gene

Orthologs for MMP24-AS1 Gene

Evolution for MMP24-AS1 Gene

ENSEMBL:
Gene Tree for MMP24-AS1 (if available)
TreeFam:
Gene Tree for MMP24-AS1 (if available)

No data available for Orthologs for MMP24-AS1 Gene

Paralogs for MMP24-AS1 Gene

No data available for Paralogs for MMP24-AS1 Gene

Variants for MMP24-AS1 Gene

Sequence variations from dbSNP and Humsavar for MMP24-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10231 -- 35,279,172(-) CATGG(A/G/T)CTCCT nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1042971 -- 35,276,007(+) GGGTT(C/T)ATCAA intron-variant, utr-variant-3-prime
rs1043423 -- 35,279,162(-) TGGCT(C/T)TGGAC nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs111930077 -- 35,279,903(+) GGATC(C/T)GCCTC intron-variant, upstream-variant-2KB
rs112372493 -- 35,276,869(+) GCACT(G/T)GGGGC nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MMP24-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1059168 CNV loss 25217958
nsv585943 CNV loss 21841781

Relevant External Links for MMP24-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MMP24-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MMP24-AS1 Gene

Disorders for MMP24-AS1 Gene

Relevant External Links for MMP24-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MMP24-AS1

No disorders were found for MMP24-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MMP24-AS1 Gene

Publications for MMP24-AS1 Gene

  1. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N. … Mountain J. (PLoS Genet. 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MMP24-AS1 Gene

Sources for MMP24-AS1 Gene

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