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Aliases & Descriptions for MMP12
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.4.24.65 3 | | HME 1, 2, 3 | | ME 3 | | MGC138506 2 | | MME 2 | | MMP-12 3 |
| | | Descriptions |
|---|
| Macrophage elastase 2, 3 | | Matrix metalloproteinase-12 3 | | macrophage metalloelastase 2 | | matrix metallopeptidase 12 (macrophage elastase) 2 | | matrix metalloproteinase 12 2 | | matrix metalloproteinase 12 (macrophage elastase) 1, 2 |
|
| | Search outside databases for aliases for MMP12 genePrevious GC identifers: GC11M104927 GC11M104090 GC11M102767 GC11M102271 |
Summaries for MMP12(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for MMP12: Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. It is thought that the protein encoded by this gene is cleaved at both ends to yield the active enzyme, but this processing has not been fully described. The enzyme degrades soluble and insoluble elastin. It may play a role in aneurysm formation and studies in mice suggest a role in the development of emphysema. The gene is part of a cluster of MMP genes which localize to chromosome 11q22.3. [provided by RefSeq] UniProtKB/Swiss-Prot: MMP12_HUMAN, P39900Function: May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1' site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3Gene Wiki entry for MMP12 (Matrix_metallopeptidase_12) |
Genomic Location for MMP12
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the MMP12 gene 
Entrez Gene cytogenetic band: 11q22.3 Ensembl cytogenetic band: 11q22.2 HGNC cytogenetic band: 11q22.3MMP12 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M102238:
(about GC identifiers)
Start:
|
102,238,674 bp from pter |
End:
|
102,250,922 bp from pter |
Size:
|
12,249 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000011.8 NT_033899.7
| Proteins for MMP12
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MMP12_HUMAN, P39900 (See
protein sequence)Recommended Name: Macrophage metalloelastase precursor Size: 470 amino acids; 54002 Da
Cofactor: Binds 4 calcium ions per subunit
Cofactor: Binds 2 zinc ions per subunit
Subcellular location: Secreted, extracellular space, extracellular matrix (Probable)
PDB structures from and Proteopedia :1JIZ (3D)
 1JK3 (3D)
 1OS2 (3D)
 1OS9 (3D)
 1RMZ (3D)
 1ROS (3D)
 1UTT (3D)
 1UTZ (3D)
 1Y93 (3D)
 1YCM (3D)
 1Z3J (3D)
 2HU6 (3D)
 2JXY (3D)
 2K2G (3D)
 2K9C (3D)
 2OXU (3D)
 2OXW (3D)
 2OXZ (3D)
 2POJ (3D)
 2W0D (3D)
 2Z2D (3D)
 3BA0 (3D)
 3F15 (3D)
 3F16 (3D)
 3F17 (3D)
 3F18 (3D)
 3F19 (3D)
 3F1A (3D)
 
Secondary accessions: Q2M1L9REFSEQ proteins: NP_002417.2
ENSEMBL proteins: ENSP00000320664
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: MMP12 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
IEA | -- | | GO:0005578 | proteinaceous extracellular matrix |
IEA | -- | About this table
Antibodies for MMP12: Assays for MMP12: | Protein
Domains/ Families for MMP12(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P39900
ProtoNet protein and cluster: P39900 2 Blocks protein families: IPB000585 Hemopexin repeat IPB001818 Matrixin
UniProtKB/Swiss-Prot: MMP12_HUMAN, P39900Domain: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzymeSimilarity: Belongs to the peptidase M10A familySimilarity: Contains 4 hemopexin-like domains | Gene Function for MMP12
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002426
Applied Biosystems Silencer® siRNAs for MMP12
Sigma-Aldrich siRNA and siRNA Panels for MMP12  Sigma-Aldrich shRNA Panels and shRNA for MMP12  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002426                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002426                                  untagged cDNA clone in CMV expression vector: NM_002426 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002426
UniProtKB/Swiss-Prot: MMP12_HUMAN, P39900Function: May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1' site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3Catalytic activity: Hydrolysis of soluble and insoluble elastin. Specific cleavages are also produced at 14-Ala- -Leu-15 and 16-Tyr- -Leu-17 in the B chain of insulinInduction: By exposure to lipopolysaccharide. Inhibited by dexamethasoneEnzyme Number (IUBMB): EC 3.4.24.65 Genatlas biochemistry entry for MMP12:matrix metalloproteinase 12,regulator in matrix remodeling in the MMP cluster,expressed in alveolar macrophage and placental cells,mRNA upregulated in rheumatoid arthritis6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Mmp12):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for MMP12
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for MMP12 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for MMP12 
5/27 Interacting proteins for MMP12 (ENSP000003206643) via UniProtKB, MINT, and/or STRING (see all 27
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for MMP12(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for MMP12 |
Compounds for MMP12 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Marimastat | Broad spectrum MMP inhibitor | [154039-60-8] | | ONO 4817 | Broad spectrum MMP inhibitor | [223472-31-9] | | Batimastat | Potent, broad spectrum MMP inhibitor | [130370-60-4] | | PD 166793 | Broad spectrum MMP inhibitor | [199850-67-4] | | UK 370106 | Highly selective MMP-3 and MMP-12 inhibitor | [230961-21-4] | About this table
10/12 Novoseek chemical compound relationships for MMP12 gene (see all 12
)
About this table
|
Transcripts for MMP12(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002426
Sigma-Aldrich siRNA and siRNA Panels for MMP12  Sigma-Aldrich shRNA Panels and shRNA for MMP12  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002426 REFSEQ mRNAs for MMP12 gene: NM_002426.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002426               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002426                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002426                                  untagged cDNA clone in CMV expression vector: NM_002426  Additional cDNA sequence: AK313959.1 BC112301.1 BC143773.1 CR594246.1 CR603756.1 L23808.1 3 DOTS entries: DT.310810 DT.91727117 DT.95263647 24/67 AceView cDNA sequences (see all 67
):CR603756 BQ012914 AL552270 BQ011440 AV716402 AI368844 CB241588 BQ011671 AW170498 AL552239 BE466604 CR594246 AI707582 BP352329 N41366 BE440047 AW197615 AL569775 NM_002426 BG218179 BG215020 BX115664 BG206655 N30838
highest scoring ESTs for MMP12:L23808 AL543115 BE003054 BE440047 BF327435 BF327450 AI299124 AI635789 AL569775 AW361840 Unigene Cluster for MMP12: Matrix metallopeptidase 12 (macrophage elastase) Hs.1695 [show with all ESTs]Unigene Representative Sequence: NM_002426
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000326227
|
Expression for MMP12
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| MMP12 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for MMP12
1 / 2 / 3 4 probe-sets matching MMP12 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTCTGTAAGT
SOURCE GeneReport for Unigene cluster: Hs.1695
Expression variation in blood from EXPOLDB for MMP12 UniProtKB/Swiss-Prot: MMP12_HUMAN, P39900Tissue specificity: Found in alveolar macrophages but not in peripheral blood monocytes |
Orthologs for MMP12
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for MMP12 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for MMP12
ENSEMBL Gene Tree for MMP12 | Paralogs for MMP12(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for MMP12 gene
- MMP202 MMP132 MMP72
|
SNPs/Variants for MMP12(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for MMP12 (up to first 250kb)
|
Disorders & Mutations for MMP12
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601046
10/47 Novoseek disease relationships for MMP12 gene (see all 47
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| solar elastosis |
62.01 |
1 |
12190877 (1) |
| pulmonary disease chronic obstructive |
58.15 |
13 |
18619044 (2), 15355665 (1), 15723202 (1), 19236151 (1) (see all 6) |
| pulmonary emphysema |
57.79 |
1 |
9082500 (1) |
| atherosclerotic plaque |
44.07 |
4 |
10825169 (1), 15073384 (1), 17194896 (1), 18823978 (1) |
| inflammation |
42.50 |
21 |
16510458 (3), 18001475 (2), 14656045 (1), 19167457 (1) (see all 12) |
| aortic aneurysm abdominal |
41.49 |
6 |
9835614 (1), 16122719 (1), 16082623 (1), 17182940 (1) (see all 5) |
| bronchoalveolar lavage fluid |
39.69 |
2 |
9230755 (1) |
| dermatitis herpetiformis |
35.44 |
3 |
10201535 (1), 11247893 (1) |
| atherosclerosis |
34.18 |
24 |
18403602 (5), 10825169 (2), 15359603 (1), 15531779 (1) (see all 8) |
| metastasis |
31.00 |
16 |
15709175 (2), 18396640 (2), 17357518 (2), 11923608 (2) (see all 9) |
About this table
Human Gene Mutation Database: MMP12 Genetic Association Database: MMP12 Human Genome Epidemiology Navigator: MMP12 (28 documents)
|
Medical News for MMP12(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for MMP12 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/265 PubMed articles for MMP12 gene (see all 265
):- Crystal structure of human macrophage elastase (MMP-12) in complex with a hydroxamic acid inhibitor. (PubMed id 11575929)1, 3, 4 Nar H.... Jung B. (2001)
- Substrate specificity determinants of human macrophage elastase (MMP- 12) based on the 1.1 A crystal structure. (PubMed id 11575928)1, 3, 4 Lang R....Maskos K. (2001)
- Hydrolysis of a broad spectrum of extracellular matrix proteins by human macrophage elastase. (PubMed id 9115292)1, 3, 4 Gronski T.J. Jr.... Shapiro S.D. (1997)
- Cloning and characterization of a unique elastolytic metalloproteinase produced by human alveolar macrophages. (PubMed id 8226919)1, 3, 4 Shapiro S.D.... Ley T.J. (1993)
- Genotype-phenotype relationships in an investigation of the role of proteases in abdominal aortic aneurysm expansion. (PubMed id 16082623)1, 3, 6 Eriksson P....Powell J.T. (2005)
- The role of matrix metalloproteinase polymorphisms in the rate of decline in lung function. (PubMed id 11875051)1, 3, 6 Joos L....Sandford A.J. (2002)
- Genotypes and haplotypes of matrix metalloproteinase 1, 3 and 12 genes and the risk of lung cancer. (PubMed id 16311244)1, 3, 6 Su L....Christiani D.C. (2006)
- Polymorphisms in matrix metalloproteinase-1, -3, -9, and -12 genes in relation to subarachnoid hemorrhage. (PubMed id 11546917)1, 3, 6 Zhang B....Ye S. (2001)
- Genetic polymorphisms in the matrix metalloproteinase 12 gene (MMP12) and breast cancer risk and survival: the Shanghai Breast Cancer Study. (PubMed id 15987457)3, 6 Shin A....Zheng W. (2005)
- Genetic analysis of polymorphisms in biologically relevant candidate genes in patients with abdominal aortic aneurysms. (PubMed id 15944607)3, 6 Ogata T....Kuivaniemi H. (2005)
|
Search for MMP12
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing MMP12
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing MMP12
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MMP12(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for MMP12(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for MMP12:

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|
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| | | | Tocris compounds for MMP12 |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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