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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MMP11 Gene

protein-coding   GIFtS: 67
GCID: GC22P024110

matrix metallopeptidase 11 (stromelysin 3)

(Previous name: matrix metalloproteinase 11 (stromelysin 3) )
(Previous symbol: STMY3)
 Explore 69 diseases affiliated with
MMP11 via our new
 Human Malady Compendium 
Biological research products
for MMP11
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Matrix Metallopeptidase 11 (Stromelysin 3)1 2     Stromelysin III2
STMY31 2 3 5     Stromelysin-31
MMP-112 3     EC 3.4.24.-3
SL-32 3     Matrix Metalloproteinase-113
ST32 3     EC 3.4.248
Matrix Metalloproteinase 11 (Stromelysin 3)1     EC 3.4.24.248

External Ids:    HGNC: 71571   Entrez Gene: 43202   Ensembl: ENSG000000999537   OMIM: 1852615   UniProtKB: P243473   

Export aliases for MMP11 gene to outside databases

Previous GC identifers: GC22P020811 GC22P022439 GC22P007103


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MMP11:
Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal
physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease
processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when
cleaved by extracellular proteinases. However, the enzyme encoded by this gene is activated intracellularly by furin
within the constitutive secretory pathway. Also in contrast to other MMP's, this enzyme cleaves alpha 1-proteinase
inhibitor but weakly degrades structural proteins of the extracellular matrix. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347
Function: May play an important role in the progression of epithelial malignancies

summary for MMP11:
Matrix metalloproteases (matrix metalloproteinase, MMPs), also called matrixins, are zinc-dependent
endopeptidases that are the major proteases involved in ECM degradation. MMPs are capable of degrading a
wide range of extracellular molecules and a number of bioactive molecules. 24 matrixin genes have been
identified in humans, which can be organized into six groups based on domain organization and substrate
preference: Collagenases (MMP-1, -8 and -13), Gelatinases (MMP-2 and MMP-9), Stromelysins (MMP-3, -10 and
-11), Matrilysin (MMP-7 and MMP-26), Membrane-type (MT)-MMPs (MMP-14, -15, -16, -17, -24 and -25) and others
(MMP-12, -19, -20, -21, -23, -27 and -28). MMP activity is regulated by two major endogenous inhibitors:
alpha2-macroglobulin and tissue inhibitors of metalloproteases (TIMPs). MMPs play a central role in cell
proliferation, migration, differentiation, angiogenesis, apoptosis and host defences. Dysregulatoin of MMPs
has been implicated in many diseases including arthritis, chronic ulcers, encephalomyelitis and cancer.
Tumour metastasis is a multistep process involving the dessemination of tumor cells from the primary tumor
to secondarys at a distant organ or tissue. One of the first steps in metastasis is the degradation of the
basement membrane, a process in which MMPs have been implicated. MMPs are secreted by tumor cells themselves
or by surrounding stromal cells stimulated by the nearby tumor. Numerous studies have linked altered MMP
expression in different human cancers with poor disease prognosis. MMP-1, -2, -3, -7, -9, -13 and -14 all
have elevated expression in primary tumors and/or metastases. Synthetic or natural inhibitors of MMPs result
in inhibition of metastasis, while up-regulation of MMPs led to enhanced cancer cell invasion.

Gene Wiki entry for MMP11


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NC_018933.1  NT_011520.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MMP11 gene promoter:
         Egr-3   p53   p300   MZF-1   FOXJ2 (long isoform)   HOXA5   ARP-1   FOXJ2   Pax-4a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for MMP11

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MMP11


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q11.23   Ensembl cytogenetic band:  22q11.23   HGNC cytogenetic band: 22q11.23

MMP11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MMP11 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P024110:  view genomic region     (about GC identifiers)

Start:
24,110,413 bp from pter      End:
24,126,503 bp from pter
Size:
16,091 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347 (See protein sequence)
Recommended Name: Stromelysin-3 precursor  
Size: 488 amino acids; 54590 Da
Cofactor: Binds 1 calcium ion per subunit (By similarity)
Cofactor: Binds 2 zinc ions per subunit (By similarity)
Subcellular location: Secreted, extracellular space, extracellular matrix (Probable)
Secondary accessions: Q5FX24 Q6PEZ6 Q9UC26

Explore the universe of human proteins at neXtProt for MMP11: NX_P24347

Post-translational modifications:

  • The precursor is cleaved by a furin endopeptidase (By similarity)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P24347

  • 4/7 DME Specific Peptides for MMP11 (P24347) (see all 7)
     PRCGVPD  VAAHEFGH  VWSDVTPL  KVWSDVTPL 

    MMP11 Protein expression data from MOPED and PaxDb:    About this image 
    MMP11 Protein Expression
    REFSEQ proteins: NP_005931.2  
    ENSEMBL proteins: 
     ENSP00000215743   ENSP00000409860   ENSP00000408070   ENSP00000412107  
    Reactome Protein details: P24347
    Human Recombinant Protein Products for MMP11: 
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    Uscn Proteins for MMP11

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005796Golgi lumen TAS--
    GO:0031012extracellular matrix ----

    MMP11 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for MMP11


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    MMP11 for domains           About GeneDecksing

    5/9 InterPro domains/families (see all 9):
     IPR024079 MetalloPept_cat_dom
     IPR021158 Pept_M10A_Zn_BS
     IPR021190 Pept_M10A_matrixin
     IPR000585 Hemopexin/matrixin
     IPR018486 Hemopexin/matrixin_CS

    Graphical View of Domain Structure for InterPro Entry P24347

    ProtoNet protein and cluster: P24347

    2 Blocks protein families:
    IPB000585 Hemopexin repeat
    IPB001818 Matrixin


    UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347
    Domain: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the
    enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme
    Similarity: Belongs to the peptidase M10A family
    Similarity: Contains 4 hemopexin-like domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MMP11_HUMAN, P24347
    Function: May play an important role in the progression of epithelial malignancies

         Genatlas biochemistry entry for MMP11:
    matrix metalloproteinase 11,regulator in matrix remodeling,overexpressed in stromal and epithelial cells of pancreatic
    carcinoma

         Enzyme Numbers (IUBMB): EC 3.4.24.242 EC 3.4.24.-1 EC 3.4.242

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004222metalloendopeptidase activity IEA--
    GO:0005509calcium ion binding IEA--
    GO:0008270zinc ion binding IEA--
         
    MMP11 for ontologies           About GeneDecksing


    Phenotypes:
         3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Mmp11):
     cardiovascular system  homeostasis/metabolism  tumorigenesis 

    MMP11 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Mmp11tm1Mrio for MMP11
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for MMP11 

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    hsa-miR-125a-5p hsa-let-7d hsa-miR-125a-3p hsa-miR-202 hsa-let-7c hsa-let-7g hsa-let-7a hsa-miR-3150b-3p
    SwitchGear 3'UTR luciferase reporter plasmidMMP11 3' UTR sequence
    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MMP11


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Degradation of the extracellular matrix
    Degradation of the extracellular matrix1.00
    Activation of Matrix Metalloproteinases0.40
    Degradation of collagen0.79
    2Matrix Metalloproteinases
    Matrix Metalloproteinases1.00
    Inhibition of Matrix Metalloproteinases0.68
    3Integrin Pathway
    UPA-UPAR Pathway0.51
    Transendothelial Migration of Leukocytes0.38
    4Colorectal Cancer Metastasis
    Colorectal Cancer Metastasis1.00
    5GPCR Pathway
    Pancreatic Adenocarcinoma0.55

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for MMP11
        Inhibition of Matrix Metalloproteinases
    Colorectal Cancer Metastasis
    Transendothelial Migration of Leukocytes
    UPA-UPAR Pathway
    Pancreatic Adenocarcinoma

    1 BioSystems Pathway for MMP11 
        Matrix Metalloproteinases

    4        Reactome Pathways for MMP11
        Extracellular matrix organization
    Degradation of the extracellular matrix
    Degradation of collagen
    Activation of Matrix Metalloproteinases



    MMP11 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MMP11

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    5/6 Interacting proteins for MMP11 (P243473 ENSP000002157434) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SERPINA1P010093, ENSP000003480684I2D: score=1 STRING: ENSP00000348068
    PRPF40AO754003I2D: score=1 
    FURINENSP000002681714STRING: ENSP00000268171
    MMP1ENSP000003227884STRING: ENSP00000322788
    MMP2ENSP000002190704STRING: ENSP00000219070
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006508proteolysis IEA--
    GO:0007275multicellular organismal development TAS7746327
    GO:0022617extracellular matrix disassembly TAS--
    GO:0030198extracellular matrix organization TAS--
    GO:0030574collagen catabolic process IEA--

    MMP11 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    MMP11 for compounds           About GeneDecksing

    EMD Millipore small molecules for MMP11:
    Small Molecule - inhibitor
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for MMP11 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    CP 471474Broad spectrum MMP inhibitor[210755-45-6]
    MarimastatBroad spectrum MMP inhibitor[154039-60-8]
    ONO 4817Broad spectrum MMP inhibitor[223472-31-9]
    Batimastat Potent, broad spectrum MMP inhibitor [130370-60-4]
    PD 166793Broad spectrum MMP inhibitor[199850-67-4]

    1 HMDB Compound for MMP11    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--

    2 DrugBank Compounds for MMP11    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    1-Benzyloxycarbonylamino-2-Phenyl-Ethyl)-{2-[1-Carbamoyl-2-(1h-Indol-3-Yl)-Ethylcarbamoyl]-5-Phenyl-Pentyl}-Phosphinic Acid-- --target--17139284 17016423 10592235
    Marimastat-- 154039-60-8targetantagonist10852638 10669951

    10/12 Novoseek chemical compound relationships for MMP11 gene (see all 12)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    retinoic acid 24.8 9 9111003 (3), 7657606 (2), 7664289 (1), 9824353 (1)
    12-o-tetradecanoylphorbol 13-acetate 24.2 5 10601280 (2), 10449779 (1)
    paraffin 22.7 6 12429794 (1), 9499447 (1), 15788677 (1), 11753972 (1)
    progesterone 13.5 3 15239838 (1), 19914229 (1)
    oxygen 1.95 1 11254383 (1)
    oligonucleotide 0 1 9550265 (1)
    steroid 0 1 12529417 (1)
    zinc 0 5 7559421 (2), 9446583 (1), 16946011 (1)
    proline 0 2 11254383 (1), 12738779 (1)
    serine 0 2 7523394 (1), 10049948 (1)

    Search CenterWatch for drugs/clinical trials and news about MMP11 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for MMP11 gene: 
    NM_005940.3  

    Unigene Cluster for MMP11:

    Matrix metallopeptidase 11 (stromelysin 3)
    Hs.143751  [show with all ESTs]
    Unigene Representative Sequence: NM_005940
    13 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000465385 ENST00000477567 ENST00000489582 ENST00000215743(uc002zxx.3)
    ENST00000465730 ENST00000428253 ENST00000437086(uc002zxy.3) ENST00000460352
    ENST00000434318 ENST00000493132 ENST00000492464 ENST00000488363 ENST00000480185


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    Additional cDNA sequence: 

    AK075448.1 AK129792.1 BC057788.1 DQ399599.1 X57766.1 

    22 DOTS entries:

    DT.95373912  DT.91781698  DT.100696344  DT.95286692  DT.75109588  DT.95252713  DT.120634191  DT.75151508 
    DT.40299587  DT.100798588  DT.100798589  DT.40123967  DT.95286578  DT.100715072  DT.120634200  DT.120634331 
    DT.120634203  DT.120634265  DT.120634313  DT.87077942  DT.95216912  DT.100645769 

    24/341 AceView cDNA sequences (see all 341):

    AI123521 BF111856 CR612686 AI126136 BC057788 AI742579 H12885 H02383 
    AK075448 CR624369 AK125911 R28596 AI554159 BI520017 AK129792 R27452 
    AI923616 AI126404 AI188464 BM547508 AI285083 R36188 H01698 AI126390 

    GeneLoc Exon Structure

    5/8 Alternative Splicing Database (ASD) splice patterns (SP) for MMP11 (see all 8)    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b
    SP1:                    -     -                                               -     -     -     -                     
    SP2:                          -                                               -     -     -                           
    SP3:                                                                          -     -     -                           
    SP4:                                                                          -                                       
    SP5:        -                 -                                                                                       


    ECgene alternative splicing isoforms for MMP11

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    MMP11 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CAGGAGACCC
    MMP11 Expression
    About this image

    MMP11 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    3 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Spinal CordSpinal Floor PlateFloor Plate Cells Neural Ectoderm
    BrainMedulla OblongataBrain
    Spinal CordSpinal Floor PlateSpinal Cord
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 4 LifeMap Cells 
    NameCategory
    PureStem™ progenitor EN13 (Embryonic Progenitor Cell)
    PureStem™ progenitor EN7 (Embryonic Progenitor Cell)
    N2/LSB/S/F8/CHIR-induced cells (Generation of midbra...)
    Posterior foregut-like cells (A scalable, suspensi...)

    See MMP11 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for MMP11

    SOURCE GeneReport for Unigene cluster: Hs.143751

    UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347
    Tissue specificity: Specifically expressed in stromal cells of breast carcinomas

        SABiosciences Expression via Pathway-Focused PCR Arrays including MMP11: 
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              Tumor Metastasis in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for MMP11 gene from 6/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves MMP111 matrix metallopeptidase 11 (stromelysin 3) 67.87(n)
    67.23(a)
      769489  XM_001232776.2  XP_001232777.2 
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC642472 hypothetical protein MGC64247 73.23(n)    Z27093.1 
    zebrafish
    (Danio rerio)
    Actinopterygii mmp11b1 matrix metallopeptidase 11b (stromelysin 3) 63.15(n)
    61.56(a)
      565793  XM_689061.5  XP_694153.3 
    worm
    (Caenorhabditis elegans)
    Secernentea H36L18.16
    Protein H36L18.1
    21(a)
    possible ortholog
    X(12647047-12651417)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G450406
    AT1G599706
    (see all 5)
    matrix metalloprotease domain-containing protein
    (see all 5)
    23(a)
    22(a)
    (see all 5)
    many ↔ many
    many ↔ many
    (see all 5)
    2(18577650-18578914)
    1(22073534-22074876)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 4)
    matrixin family protein
    metalloendoproteinase 1 precursor, putative, expre...
    (see all 4)
    8(a)
    21(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    10(21890877-21896676)
    10(21883516-21885765)


    ENSEMBL Gene Tree for MMP11 (if available)
    TreeFam Gene Tree for MMP11 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for MMP11 gene
    MMP132  MMP202  MMP82  MMP142  MMP92  MMP162  MMP22  MMP252  
    MMP242  MMP152  MMP32  MMP272  MMP172  MMP102  MMP12  
    18/19 SIMAP similar genes for MMP11 using alignment to 6 protein entries:     MMP11_HUMAN (see all proteins) (see all similar genes):
    MMP26    MMP7    MMP1    MMP24    MMP17    MMP3
    MMP14    MMP13    MMP10    MMP16    MMP12    MMP19
    MMP20    MMP25    MMP15    mmp20    MMP8    MMP2

    MMP11 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/281 NCBI SNPs in MMP11 are shown (see all 281    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 22 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1119593341,2
    --7101397(+) TGAATA/GAGCTG 1 -- us2k12Minor allele frequency- G:0.21CSA WA 120
    rs738818151,2
    C--7101549(+) AGGTCG/TCCTGG 1 -- us2k12Minor allele frequency- T:0.05WA 120
    rs283636051,2
    C--7101636(+) GAAGGA/GTCCCT 1 -- us2k16Minor allele frequency- G:0.02NS WA 278
    rs283636061,2
    C--7101711(+) AGTCTC/TGCTCT 1 -- us2k15Minor allele frequency- T:0.01NS 160
    rs283636071,2
    C,F--7102224(+) ACTTCG/AGTCTA 1 -- us2k16Minor allele frequency- A:0.03NS WA 304
    rs283636081,2
    C--7102299(+) TATCCC/TTTTCC 1 -- us2k1 trp35Minor allele frequency- T:0.01NS 184
    rs81377331,2
    C,F--7102503(+) gaatcG/Atttga 1 -- us2k15Minor allele frequency- A:0.05NS 186
    rs283636111,2
    C,F,H--7102853(+) CAGAGG/AAGAAA 1 -- us2k1 trp36Minor allele frequency- A:0.00NS 352
    rs283636121,2
    F--7103303(+) GCGGCG/AGATCC 1 -- int15Minor allele frequency- A:0.02NS 134
    rs124845311,2
    H--7103523(+) GGGTGA/CTGGAG 1 -- int10--------

    HapMap Linkage Disequilibrium report for MMP11 (24110413 - 24126503 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for MMP11: --

    1 SABiosciences Cancer Mutation PCR Assay for MMP11:
    Cosmic IdAA Change
    110536p.R70L
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MMP11
    DNA2.0 Custom Variant and Variant Library Synthesis for MMP11

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    MMP11 for disorders           About GeneDecksing

    OMIM gene information: 185261    OMIM disorders: --

    20/69 diseases for MMP11 (see all 69):    About MalaCards
    space motion sickness    aleutian mink disease    arthritis    dermatofibrosarcoma protuberans
    encephalomyelitis    cutaneous fibrous histiocytoma    angiomatous meningioma    dermatofibrosarcoma
    non-hodgkin lymphoma    uterine fibroid    fibrous histiocytoma    squamous cell carcinoma
    papillary renal cell carcinoma    squamous cell carcinoma of the head and neck    esophageal squamous cell carcinoma    renal cell carcinoma
    carcinoma    benign tumors    hodgkin's lymphoma    trichoepithelioma

    3 diseases from the University of Copenhagen DISEASES database for MMP11:
    Breast cancer     Cutaneous fibrous histiocytoma     Space motion sickness

    10/45 Novoseek disease relationships for MMP11 gene (see all 45)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    breast carcinoma 64.3 53 8446598 (4), 9502414 (3), 11753972 (3), 7518738 (3) (see all 22)
    carcinoma 59.2 120 7657519 (5), 9099978 (4), 11193473 (4), 8645587 (3) (see all 47)
    dermatofibroma 57.2 10 11862177 (4), 8757754 (2), 9699179 (1), 10233668 (1) (see all 5)
    metastasis 55.4 42 18476627 (4), 15459498 (3), 11193473 (3), 11250937 (2) (see all 20)
    tumors 52.9 160 8621777 (5), 7657519 (4), 7518738 (4), 19914229 (4) (see all 73)
    pathological processes 52.4 5 15780176 (1), 19212658 (1), 10887496 (1)
    breast cancer 51.6 62 9335457 (3), 17233884 (3), 19914229 (3), 7591307 (2) (see all 34)
    carcinoma basal cell 49.1 22 1342967 (4), 8757754 (3), 8297480 (2), 11701402 (2) (see all 8)
    invasive cancer 46.1 9 9499447 (3), 7677979 (1), 18622425 (1), 7518738 (1) (see all 5)
    cancer 45.8 98 14522908 (4), 18979628 (4), 16322233 (4), 19509157 (3) (see all 36)

    Human Genome Epidemiology (HuGE) Navigator: MMP11 (9 documents)

    Export disorders for MMP11 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for MMP11 gene, integrated from 9 sources (see all 262):
    (articles sorted by number of sources associating them with MMP11)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Structure and promoter characterization of the human stromelysin-3 gene. (PubMed id 7657606)1, 2, 3, 9 Anglard P....Basset P. (1995)
    2. Assignment of the human stromelysin 3 (STMY3) gene to the q11.2 region of chromosome 22. (PubMed id 1639418)1, 3, 9 Levy A....Basset P. (1992)
    3. Furin-dependent intracellular activation of the human stromelysin-3 zymogen. (PubMed id 7746327)1, 2, 9 Pei D. and Weiss S.J. (1995)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Alternative splicing and promoter usage generates an intracellular stromelysin 3 isoform directly translated as an active matrix metalloproteinase. (PubMed id 12006591)1, 3 Luo D....Anglard P. (2002)
    6. A novel metalloproteinase gene specifically expressed in stromal cells of breast carcinomas. (PubMed id 1701851)1, 2 Basset P.... Chambon P. (1990)
    7. Mutational analysis of the cleavage of the cancer-associated laminin receptor by stromelysin-3 reveals the contribution of flanking sequences to site recognition and cleavage efficiency. (PubMed id 19212658)1, 9 Fiorentino M....Shi Y.B. (2009)
    8. Stromelysin-3 over-expression enhances tumourigenesis in MCF-7 and MDA-MB-231 breast cancer cell lines: involvement of the IGF-1 signalling pathway. (PubMed id 17233884)1, 9 Kasper G....Lehmann K.E. (2007)
    9. Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: correlation with microvessel density, progression, and prognosis. (PubMed id 15788677)1, 9 Arora S....Ralhan R. (2005)
    10. Overexpression of matrix metalloproteinase 11 in huma n gastric carcinoma and its clinicopathologic significance. (PubMed id 20060156)1, 9 Zhao Z.S....Tao H.Q. (2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 4320 HGNC: 7157 AceView: MMP11 Ensembl:ENSG00000099953 euGenes: HUgn4320
    ECgene: MMP11 H-InvDB: MMP11

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for MMP11 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for MMP11 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/mmp11/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for MMP11 gene:
    Search GeneIP for patents involving MMP11

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

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