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Aliases & Descriptions for MMP11
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.4.24.- 3 | | MMP-11 3 | | SL-3 2, 3 | | ST3 2, 3 | | STMY3 2, 3, 5 |
| | | Descriptions |
|---|
| Matrix metalloproteinase-11 3 | | matrix metallopeptidase 11 (stromelysin 3) 2 | | matrix metalloproteinase 11 2 | | matrix metalloproteinase 11 (stromelysin 3) 1, 2 | | stromelysin 3 2 | | stromelysin III 2 |
|
| | Search outside databases for aliases for MMP11 genePrevious GC identifer: GC22P020811 |
Summaries for MMP11(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for MMP11: Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are activated when cleaved by extracellular proteinases. However, the enzyme encoded by this gene is activated intracellularly by furin within the constitutive secretory pathway. Also in contrast to other MMP's, this enzyme cleaves alpha 1-proteinase inhibitor but weakly degrades structural proteins of the extracellular matrix. [provided by RefSeq] UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347Function: May play an important role in the progression of epithelial malignanciesGene Wiki entry for MMP11 |
Genomic Location for MMP11
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the MMP11 gene 
Entrez Gene cytogenetic band: 22q11.2|22q11.23 Ensembl cytogenetic band: 22q11.23 HGNC cytogenetic band: 22q11.23MMP11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P022439:
(about GC identifiers)
Start:
|
22,445,036 bp from pter |
End:
|
22,456,503 bp from pter |
Size:
|
11,468 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000022.9 NT_011520.11
| Proteins for MMP11
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347 (See
protein sequence)Recommended Name: Stromelysin-3 precursor Size: 488 amino acids; 54618 Da
Cofactor: Binds 1 calcium ion per subunit (By similarity)
Cofactor: Binds 2 zinc ions per subunit (By similarity)
Subcellular location: Secreted, extracellular space, extracellular matrix (Probable)
Secondary accessions: Q5FX24 Q6PEZ6 Q9UC26Post-translational modifications:
The precursor is cleaved by a furin endopeptidase (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005931.2
ENSEMBL proteins: ENSP00000215743
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for MMP11: Assays for MMP11: | Protein
Domains/ Families for MMP11(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P24347
ProtoNet protein and cluster: P24347 2 Blocks protein families: IPB000585 Hemopexin repeat IPB001818 Matrixin
UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347Domain: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzymeSimilarity: Belongs to the peptidase M10A familySimilarity: Contains 4 hemopexin-like domains | Gene Function for MMP11
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005940
Applied Biosystems Silencer® siRNAs for MMP11
Sigma-Aldrich siRNA and siRNA Panels for MMP11  Sigma-Aldrich shRNA Panels and shRNA for MMP11  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005940                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005940                                  untagged cDNA clone in CMV expression vector: NM_005940 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005940
UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347Function: May play an important role in the progression of epithelial malignanciesEnzyme Number (IUBMB): EC 3.4.24.- Genatlas biochemistry entry for MMP11:matrix metalloproteinase 11,regulator in matrix remodeling,overexpressed in stromal and epithelial cells of pancreatic carcinoma3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Mmp11):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for MMP11
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 3 Sigma-Aldrich "Your Favorite Gene" Pathways for MMP11 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for MMP11 
5/21 Interacting proteins for MMP11 (ENSP000002157433) via UniProtKB, MINT, and/or STRING (see all 21
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for MMP11(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for MMP11 |
Compounds for MMP11 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Marimastat | Broad spectrum MMP inhibitor | [154039-60-8] | | ONO 4817 | Broad spectrum MMP inhibitor | [223472-31-9] | | Batimastat | Potent, broad spectrum MMP inhibitor | [130370-60-4] | | PD 166793 | Broad spectrum MMP inhibitor | [199850-67-4] | About this table
7 Novoseek chemical compound relationships for MMP11 gene
About this table
|
Transcripts for MMP11(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005940
Sigma-Aldrich siRNA and siRNA Panels for MMP11  Sigma-Aldrich shRNA Panels and shRNA for MMP11  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005940 REFSEQ mRNAs for MMP11 gene: NM_005940.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005940               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005940                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005940                                  untagged cDNA clone in CMV expression vector: NM_005940  Additional cDNA sequence: AK075448.1 AK129792.1 BC057788.1 CR602252.1 CR612686.1 CR624369.1 CR626443.1 DQ399599.1 X57766.1 22 DOTS entries: DT.95373912 DT.91781698 DT.100696344 DT.95252713 DT.95286692 DT.75109588 DT.40299587 DT.120634191 DT.75151508 DT.100798588 DT.100798589 DT.40123967 DT.95286578 DT.100715072 DT.120634200 DT.120634331 DT.120634203 DT.120634265 DT.120634313 DT.87077942 DT.95216912 DT.100645769 24/341 AceView cDNA sequences (see all 341
):AI554159 R27452 AK075448 R28596 AI123521 AI126404 AI923616 H02383 CR612686 AI126136 CR624369 BI520017 BF111856 H12885 AK129792 BC057788 AI742579 AK125911 BX451144 AA291560 BX410521 AI188464 AL133974 BU179465
highest scoring ESTs for MMP11:X57766 AA336162 AI057119 AI199857 AI220657 AI337465 AK075448 AK129792 BC057788 BF475827 Unigene Cluster for MMP11: Matrix metallopeptidase 11 (stromelysin 3) Hs.143751 [show with all ESTs]Unigene Representative Sequence: NM_005940
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for MMP11 (see all 8
)
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | · | 3c | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | ^ | 8a | · | 8b | ^ | 9a | · | 9b | ^ | 10a | · | 10b | |
| SP1: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for MMP11
1 Ensembl transcript including schematic representation: ENST00000215743
|
Expression for MMP11
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| MMP11 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for MMP11
1 / 2 / 3 5 probe-sets matching MMP11 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CAGGAGACCC
SOURCE GeneReport for Unigene cluster: Hs.143751
Expression variation in blood from EXPOLDB for MMP11 UniProtKB/Swiss-Prot: MMP11_HUMAN, P24347Tissue specificity: Specifically expressed in stromal cells of breast carcinomas |
Orthologs for MMP11
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for MMP11 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for MMP11
ENSEMBL Gene Tree for MMP11 | Paralogs for MMP11(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for MMP11 gene
- MMP172 MMP252 MMP262
|
SNPs/Variants for MMP11(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for MMP11 (up to first 250kb)
|
Disorders & Mutations for MMP11
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 185261
10/45 Novoseek disease relationships for MMP11 gene (see all 45
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| breast carcinoma |
65.49 |
51 |
8446598 (4), 9502414 (3), 11753972 (3), 7518738 (3) (see all 22) |
| carcinoma |
60.16 |
117 |
7657519 (5), 9099978 (4), 11193473 (4), 8645587 (3) (see all 46) |
| dermatofibroma |
58.82 |
10 |
11862177 (4), 8757754 (2), 9699179 (1), 10233668 (1) (see all 5) |
| metastasis |
54.62 |
41 |
18476627 (4), 15459498 (3), 11193473 (3), 11250937 (2) (see all 19) |
| tumors |
52.49 |
145 |
8621777 (5), 7657519 (4), 7518738 (4), 9177406 (3) (see all 68) |
| breast cancer |
51.23 |
58 |
9335457 (3), 17233884 (3), 7591307 (2), 9502414 (2) (see all 32) |
| carcinoma basal cell |
50.89 |
22 |
1342967 (4), 8757754 (3), 8297480 (2), 11701402 (2) (see all 8) |
| pathological processes |
49.97 |
5 |
15780176 (1), 19212658 (1), 10887496 (1) |
| invasive cancer |
47.83 |
9 |
9499447 (3), 7677979 (1), 18622425 (1), 7518738 (1) (see all 5) |
| cancer |
45.23 |
91 |
14522908 (4), 18979628 (4), 16322233 (4), 9335457 (2) (see all 34) |
About this table
|
Medical News for MMP11(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for MMP11 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/226 PubMed articles for MMP11 gene (see all 226
):- Structure and promoter characterization of the human stromelysin-3 gene. (PubMed id 7657606)1, 2, 3, 4 Anglard P....Basset P. (1995)
- Assignment of the human stromelysin 3 (STMY3) gene to the q11.2 region of chromosome 22. (PubMed id 1639418)1, 2, 3 Levy A....Basset P. (1992)
- Furin-dependent intracellular activation of the human stromelysin-3 zymogen. (PubMed id 7746327)1, 3, 4 Pei D. and Weiss S.J. (1995)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Alternative splicing and promoter usage generates an intracellular stromelysin 3 isoform directly translated as an active matrix metalloproteinase. (PubMed id 12006591)2, 3 Luo D....Anglard P. (2002)
- A novel metalloproteinase gene specifically expressed in stromal cells of breast carcinomas. (PubMed id 1701851)3, 4 Basset P.... Chambon P. (1990)
- Mutational analysis of the cleavage of the cancer-associated laminin receptor by stromelysin-3 reveals the contribution of flanking sequences to site recognition and cleavage efficiency. (PubMed id 19212658)1, 3 Fiorentino M....Shi Y.B. (2009)
- Stromelysin-3 over-expression enhances tumourigenesis in MCF-7 and MDA-MB-231 breast cancer cell lines: involvement of the IGF-1 signalling pathway. (PubMed id 17233884)1, 3 Kasper G....Lehmann K.E. (2007)
- Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: correlation with microvessel density, progression, and prognosis. (PubMed id 15788677)1, 3 Arora S....Ralhan R. (2005)
- Stromelysin-3 is expressed by aggressive meningiomas. (PubMed id 11857311)1, 3 Perret A.G....Mosnier J.F. (2002)
|
Search for MMP11
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing MMP11
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing MMP11
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MMP11(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for MMP11(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for MMP11:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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