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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MMP10 Gene

protein-coding   GIFtS: 72
GCID: GC11M102641

Matrix Metallopeptidase 10 (Stromelysin 2)

(Previous name: matrix metalloproteinase 10 (stromelysin 2))
(Previous symbol: STMY2)
Microbiology & Infectious Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Matrix Metallopeptidase 10 (Stromelysin 2)1 2     Stromelysin 22
STMY21 2 3 5     stromelysin-22
Matrix Metalloproteinase 10 (Stromelysin 2)1 2     Transin 22
Matrix Metalloproteinase-102 3     transin-22
MMP-102 3     EC 3.4.24.223
SL-22 3     Transin-23
Matrix Metalloprotease 102     EC 3.4.248

External Ids:    HGNC: 71561   Entrez Gene: 43192   Ensembl: ENSG000001666707   OMIM: 1852605   UniProtKB: P092383   

Export aliases for MMP10 gene to outside databases

Previous GC identifers: GC11M104834 GC11M103998 GC11M102675 GC11M102178 GC11M102146 GC11M098569


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MMP10 Gene:
Proteins of the matrix metalloproteinase (MMP) family are involved in the breakdown of extracellular matrix in
normal physiological processes, such as embryonic development, reproduction, and tissue remodeling, as well as in
disease processes, such as arthritis and metastasis. Most MMP's are secreted as inactive proproteins which are
activated when cleaved by extracellular proteinases. The enzyme encoded by this gene degrades proteoglycans and
fibronectin. The gene is part of a cluster of MMP genes which localize to chromosome 11q22.3. (provided by
RefSeq, Jul 2008)

GeneCards Summary for MMP10 Gene: 
MMP10 (matrix metallopeptidase 10 (stromelysin 2)) is a protein-coding gene. Diseases associated with MMP10 include mast cell neoplasm, and refractive error, and among its related super-pathways are Inhibition of Matrix Metalloproteinases and Metalloproteases in connective tissue degradation. GO annotations related to this gene include metalloendopeptidase activity and calcium ion binding. An important paralog of this gene is MMP20.

UniProtKB/Swiss-Prot: MMP10_HUMAN, P09238
Function: Can degrade fibronectin, gelatins of type I, III, IV, and V; weakly collagens III, IV, and V. Activates
procollagenase

summary for MMP10 Gene:
Matrix metalloproteases (matrix metalloproteinase, MMPs), also called matrixins, are zinc-dependent
endopeptidases that are the major proteases involved in ECM degradation. MMPs are capable of degrading a
wide range of extracellular molecules and a number of bioactive molecules. 24 matrixin genes have been
identified in humans, which can be organized into six groups based on domain organization and substrate
preference: Collagenases (MMP-1, -8 and -13), Gelatinases (MMP-2 and MMP-9), Stromelysins (MMP-3, -10 and
-11), Matrilysin (MMP-7 and MMP-26), Membrane-type (MT)-MMPs (MMP-14, -15, -16, -17, -24 and -25) and others
(MMP-12, -19, -20, -21, -23, -27 and -28). MMP activity is regulated by two major endogenous inhibitors:
alpha2-macroglobulin and tissue inhibitors of metalloproteases (TIMPs). MMPs play a central role in cell
proliferation, migration, differentiation, angiogenesis, apoptosis and host defences. Dysregulatoin of MMPs
has been implicated in many diseases including arthritis, chronic ulcers, encephalomyelitis and cancer.
Tumour metastasis is a multistep process involving the dessemination of tumor cells from the primary tumor
to secondarys at a distant organ or tissue. One of the first steps in metastasis is the degradation of the
basement membrane, a process in which MMPs have been implicated. MMPs are secreted by tumor cells themselves
or by surrounding stromal cells stimulated by the nearby tumor. Numerous studies have linked altered MMP
expression in different human cancers with poor disease prognosis. MMP-1, -2, -3, -7, -9, -13 and -14 all
have elevated expression in primary tumors and/or metastases. Synthetic or natural inhibitors of MMPs result
in inhibition of metastasis, while up-regulation of MMPs led to enhanced cancer cell invasion.

Gene Wiki entry for MMP10 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.2  NT_033899.8  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the MMP10 gene promoter:
         CREB   SRF   AP-1   deltaCREB   ATF-2   SRF (504 AA)   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidMMP10 promoter sequence
   Search SABiosciences Chromatin IP Primers for MMP10

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MMP10


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q22.3   Ensembl cytogenetic band:  11q22.2   HGNC cytogenetic band: 11q22.3

MMP10 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MMP10 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M102641:  view genomic region     (about GC identifiers)

Start:
102,641,233 bp from pter      End:
102,651,359 bp from pter
Size:
10,127 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: MMP10_HUMAN, P09238 (See protein sequence)
Recommended Name: Stromelysin-2 precursor  
Size: 476 amino acids; 54151 Da
Cofactor: Binds 2 zinc ions per subunit
Cofactor: Calcium
Subcellular location: Secreted, extracellular space, extracellular matrix (Probable)
2 PDB 3D structures from and Proteopedia for MMP10:
1Q3A (3D)        3V96 (3D)    
Secondary accessions: B2R9X9 Q53HH9

Explore the universe of human proteins at neXtProt for MMP10: NX_P09238

Explore proteomics data for MMP10 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P09238

  • 4/12 DME Specific Peptides for MMP10 (P09238) (see all 12)
     HSLGLFH  GEADIMI  GIQSLYG  YRIVNYT 

    MMP10 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    MMP10 Protein Expression
    REFSEQ proteins: NP_002416.1  
    ENSEMBL proteins: 
     ENSP00000279441   ENSP00000441485  
    Reactome Protein details: P09238
    Human Recombinant Protein Products for MMP10: 
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    R&D Systems Recombinant & Natural Proteins for MMP10 (MMP-10)
    Enzo Life Sciences proteins for MMP10
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate for MMP10
    OriGene Custom MassSpec 
    OriGene Custom Protein Services for MMP10
    GenScript Custom Purified and Recombinant Proteins Services for MMP10
    Novus Biologicals MMP10 Proteins
    Novus Biologicals MMP10 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for MMP10 

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005615extracellular space TAS2844164
    GO:0031012extracellular matrix ----

    MMP10 for ontologies           About GeneDecksing



    MMP10 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
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    Novus Biologicals MMP10 Antibodies
    Abcam antibodies for MMP10
    Cloud-Clone Corp. Antibodies for MMP10 
    ThermoFisher Antibody for MMP10
    LSBio Antibodies in human, mouse, rat for MMP10 

    Assay Products for MMP10: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Assay Services for MMP10
    R&D Systems ELISAs for MMP10 (MMP-10)         (see all)
    GenScript MMP10-Activity-based Protease Assay for Compound Screening
    Enzo Life Sciences assays for MMP10
    Cloud-Clone Corp. ELISAs for MMP10 
    Cloud-Clone Corp. CLIAs for MMP10


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    IUPHAR Guide to PHARMACOLOGY protein family classification: MMP10 
    Cell-surface protein and extracellular matrix metalloproteinases

    5/10 InterPro protein domains (see all 10):
     IPR024079 MetalloPept_cat_dom
     IPR021158 Pept_M10A_Zn_BS
     IPR021190 Pept_M10A
     IPR000585 Hemopexin-like_dom
     IPR018486 Hemopexin_CS

    Graphical View of Domain Structure for InterPro Entry P09238

    ProtoNet protein and cluster: P09238

    3 Blocks protein domains:
    IPB000585 Hemopexin repeat
    IPB001818 Matrixin
    IPB002477 Putative peptidoglycan binding domain 1


    UniProtKB/Swiss-Prot: MMP10_HUMAN, P09238
    Domain: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting
    the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the
    enzyme
    Similarity: Belongs to the peptidase M10A family
    Similarity: Contains 4 hemopexin repeats


    MMP10 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: MMP10_HUMAN, P09238
    Function: Can degrade fibronectin, gelatins of type I, III, IV, and V; weakly collagens III, IV, and V. Activates
    procollagenase
    Catalytic activity: Similar to stromelysin 1, but action on collagen types III, IV and V is weak

         Genatlas biochemistry entry for MMP10:
    matrix metalloproteinase 10,regulator in matrix remodeling in the MMP cluster,expressed in the developing bone

         Enzyme Numbers (IUBMB): EC 3.4.242 EC 3.4.24.221

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004222metalloendopeptidase activity IEA--
    GO:0005509calcium ion binding IEA--
    GO:0008237metallopeptidase activity ----
    GO:0008270zinc ion binding IEA--
         
    MMP10 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for MMP10:
     Proliferating cells 

         4 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Mmp10):
     cardiovascular system  immune system  normal  respiratory system 

    MMP10 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-outs for MMP10: Mmp10tm1Jkmg Mmp10tm1Lex

       inGenious Targeting Laboratory - Custom generated mouse model solutions for MMP10 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for MMP10

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for MMP10 
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for MMP10 

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat MMP10
    1 QIAGEN miScript miRNA Assays for microRNA that regulate MMP10:
    hsa-miR-496
    SwitchGear 3'UTR luciferase reporter plasmidMMP10 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for MMP10
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    Gene Editing
    Products:
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    Sirion Biotech Customized adenovirus for overexpression of MMP10

    Clone
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    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene clones in human, mouse for MMP10 (see all 7)
    OriGene ORF clones in mouse, rat for MMP10
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: MMP10 (NM_002425)
    Sino Biological Human cDNA Clone for MMP10
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for MMP10
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MMP10
    Sirion Biotech Customized lentivirus for stable overexpression of MMP10 
                         Customized lentivirus expression plasmids for stable overexpression of MMP10 

    Cell Line
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    GenScript Custom overexpressing Cell Line Services for MMP10
    LifeMap BioReagents: cell line associated with MMP10: PureStem 7SMOO32, NCr-fac & Meso Progenitor
    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MMP10


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    SuperPaths for MMP10 About   (see top 5)                                                                                              See pathways by source

    SuperPathContained pathways About
    1Matrix Metalloproteinases
    Matrix Metalloproteinases0.68
    Inhibition of Matrix Metalloproteinases0.68
    2Cell adhesion ECM remodeling
    Cell adhesion ECM remodeling0.31
    Metalloproteases in connective tissue degradation0.31
    3Degradation of the extracellular matrix
    Degradation of the extracellular matrix0.79
    Activation of Matrix Metalloproteinases0.40
    Degradation of collagen0.79
    4Integrin Pathway
    UPA-UPAR Pathway0.56
    Transendothelial Migration of Leukocytes0.38
    5GPCR Pathway
    Pancreatic Adenocarcinoma0.59
    6Collagen biosynthesis and modifying enzymes
    Extracellular matrix organization0.39

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways

    2 EMD Millipore Pathways for MMP10
        Cell adhesion ECM remodeling
    Metalloproteases in connective tissue degradation

    4 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for MMP10
        Inhibition of Matrix Metalloproteinases
    Transendothelial Migration of Leukocytes
    UPA-UPAR Pathway
    Pancreatic Adenocarcinoma

    1 GeneGo (Thomson Reuters) Pathway for MMP10
        Cell adhesion ECM remodeling

    1 BioSystems Pathway for MMP10
        Matrix Metalloproteinases


    4        Reactome Pathways for MMP10
        Extracellular matrix organization
    Degradation of the extracellular matrix
    Degradation of collagen
    Activation of Matrix Metalloproteinases



    MMP10 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for MMP10

    STRING Interaction Network Preview (showing 5 interactants - click image to see 8)

    5/8 Interacting proteins for MMP10 (P092383 ENSP000002794414) via UniProtKB, MINT, STRING, and/or I2D (see all 8)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HAPLN1P109153, ENSP000002743414I2D: score=1 STRING: ENSP00000274341
    MMP9P147803, ENSP000003614054I2D: score=1 STRING: ENSP00000361405
    BCANQ96GW73, ENSP000003312104I2D: score=2 STRING: ENSP00000331210
    MMP1ENSP000003227884STRING: ENSP00000322788
    MMP2ENSP000002190704STRING: ENSP00000219070
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006508proteolysis IEA--
    GO:0022617extracellular matrix disassembly TAS--
    GO:0030198extracellular matrix organization TAS--
    GO:0030334regulation of cell migration IEA--
    GO:0030574collagen catabolic process TAS--

    MMP10 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    MMP10 for compounds           About GeneDecksing

    EMD Millipore small molecules for MMP10:
    Small Molecule - inhibitor
    Enzo Life Sciences drugs & compounds for MMP10

    Compounds for MMP10 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    GI 254023XSelective ADAM10 metalloprotease inhibitor[260264-93-5]
    MarimastatBroad spectrum MMP inhibitor[154039-60-8]
    GM 6001Broad-spectrum MMP inhibitor[142880-36-2]
    UK 383367Potent and selective BMP-1 (PCP) inhibitor[348622-88-8]
    Batimastat Potent, broad spectrum MMP inhibitor [130370-60-4]

    1 HMDB Compound for MMP10    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--

    2 DrugBank Compounds for MMP10    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Marimastat-- 154039-60-8targetantagonist10852638 10669951
    N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID-- --target--10592235

    7 Novoseek inferred chemical compound relationships for MMP10 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    (4-aminophenyl)mercuric acetate 74.2 1 9578462 (1)
    matrigel 22.8 1 12379519 (1)
    12-o-tetradecanoylphorbol 13-acetate 9.97 1 8144618 (1)
    serine 8.4 6 15870107 (3), 19762781 (1), 16983356 (1), 17069010 (1)
    vegf 4.55 3 15868281 (1), 16980307 (1), 19220217 (1)
    oligonucleotide 0 2 8269280 (1), 9550265 (1)
    calcium 0 2 19769250 (1)

    Search CenterWatch for drugs/clinical trials and news about MMP10

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for MMP10 gene: 
    NM_002425.2  

    Unigene Cluster for MMP10:

    Matrix metallopeptidase 10 (stromelysin 2)
    Hs.2258  [show with all ESTs]
    Unigene Representative Sequence: NM_002425
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000279441(uc001phg.2) ENST00000539681
    Congresses - knowledge worth sharing:  
    European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

    miRNA
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    1 QIAGEN miScript miRNA Assays for microRNA that regulate MMP10:
    hsa-miR-496
    SwitchGear 3'UTR luciferase reporter plasmidMMP10 3' UTR sequence
    Inhib. RNA
    Products:
         
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for MMP10
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat MMP10
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    Primer
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MMP10

    Additional mRNA sequence: 

    AK222601.1 AK313960.1 BC002591.2 BT007442.1 X07820.1 

    5 DOTS entries:

    DT.106379  DT.120702938  DT.120702949  DT.99929471  DT.313463 

    24/56 AceView cDNA sequences (see all 56):

    BX281044 BP350564 BP351322 X07820 BC002591 NM_002425 BP351309 AI973162 
    BP351427 BP352259 BP352568 BP350592 BP352531 BE740153 BP351724 AW949366 
    BT007442 BP351604 BP351299 AW296143 BP351055 CF596568 BM555652 BP351598 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    MMP10 expression in normal human tissues (normalized intensities)      MMP10 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    MMP10 Expression
    About this image


    MMP10 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/17 selected tissues (see all 17) fully expand
     
     Endothelium (Cardiovascular System)    fully expand to see all 6 entries
             PureStem endothelial progenitor 30-SM2-1
             Human Umbilical Artery Endothelial Cells (HUAEC)   
     
     Umbilical Cord (Extraembryonic Tissues)    fully expand to see all 3 entries
             Wharton's jelly-derived stem cells
             Human Umbilical Artery Endothelial Cells (HUAEC)   
     
     Intestine (Gastrointestinal Tract)    fully expand to see all 2 entries
             SMALL INTESTINE   
     
     Uterus (Reproductive System)
             Uterus Corpus   
     
     Mesoderm (Gastrulation Derivatives)
             PureStem 7SMOO32, NCr-fac & Meso Progenitor

    See MMP10 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for MMP10

    SOURCE GeneReport for Unigene cluster: Hs.2258
        SABiosciences Expression via Pathway-Focused PCR Arrays including MMP10: 
              Osteogenesis in human mouse rat
              Extracellular Matrix & Adhesion Molecules in human mouse rat
              Tumor Metastasis in human mouse rat

    Primer
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat MMP10
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MMP10

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for MMP10 gene from 4/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Mmp101 , 5 matrix metallopeptidase 101, 5 80.35(n)1
    76.42(a)1
      9 (2.46 cM)5
    173841  NM_019471.21  NP_062344.11 
     75023605 
    chicken
    (Gallus gallus)
    Aves MMP101 matrix metallopeptidase 10 (stromelysin 2) 62.55(n)
    54.68(a)
      418981  XM_417175.2  XP_417175.1 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    Uncharacterized protein
    50(a)
    49(a)
    many ↔ many
    many ↔ many
    3(192100483-192115896)
    3(192049389-192058962)
    zebrafish
    (Danio rerio)
    Actinopterygii mmp301 matrix metallopeptidase 30 53.12(n)
    43.87(a)
      678531  NM_001040291.1  NP_001035381.1 


    ENSEMBL Gene Tree for MMP10 (if available)
    TreeFam Gene Tree for MMP10 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for MMP10 gene
    MMP202  MMP132  MMP82  MMP142  MMP252  MMP162  MMP72  MMP242  
    MMP152  MMP32  MMP272  MMP112  MMP172  MMP12  
    18 SIMAP similar genes for MMP10 using alignment to 2 protein entries:     MMP10_HUMAN (see all proteins):
    MMP3    MMP1    MMP13    MMP12    MMP27    MMP8
    MMP20    MMP7    MMP2    MMP26    MMP17    MMP14
    MMP11    MMP16    MMP19    MMP24    MMP25    MMP15

    MMP10 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/386 SNPs in MMP10 are shown (see all 386)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0361394
    A breast cancer sample4--see VAR_0361392 E Q mis40--------
    rs1855118591,2
    --102640800(+) TGAGGC/GGGAGA 1 -- ds50010--------
    rs112254181,2
    C,F,A,H--102640805(+) GGGAGA/CTGAGA 1 -- ds500119Minor allele frequency- C:0.44NS EA NA WA 1416
    rs178610161,2
    C,F--102640838(-) GTGGGA/TTTCCT 1 -- ds50018Minor allele frequency- T:0.12NS NA CSA 312
    rs1888216151,2
    --102640882(+) TGGACA/TCCAAA 1 -- ds50010--------
    rs1930451121,2
    C--102640935(+) ATAATA/GTGCAG 1 -- ds50010--------
    rs178610151,2
    C--102640969(-) GAAATG/TGAACT 1 -- ds50011Minor allele frequency- T:0.01NS 180
    rs1484584191,2
    --102641024(+) TTACCC/TCTTTC 1 -- ds50010--------
    rs1152327361,2
    F--102641042(+) GGTGTG/ATAAGG 1 -- ds50011Minor allele frequency- A:0.01WA 118
    rs1438896871,2
    --102641061(+) CAATAA/TCTGTG 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for MMP10 (102641233 - 102651359 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for MMP10:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv463CNV Insertion18451855


    Human Gene Mutation Database (HGMD): MMP10
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing MMP10
    DNA2.0 Custom Variant and Variant Library Synthesis for MMP10

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 185260    OMIM disorders: --

    20/59 diseases for MMP10 (see all 59):    About MalaCards
    mast cell neoplasm    refractive error    epidermolysis bullosa dystrophica    vernal keratoconjunctivitis
    encephalomyelitis    keratoconus    pyoderma    pyoderma gangrenosum
    skin cancer    bladder transitional cell carcinoma    transitional cell carcinoma    keratoacanthoma
    arthritis    gingival overgrowth    squamous cell carcinoma of the head and neck    abdominal aortic aneurysm
    gastric adenocarcinoma    keratoconjunctivitis    epidermolysis bullosa    gingivitis

    2 diseases from the University of Copenhagen DISEASES database for MMP10:
    Lymphoma     Mast cell neoplasm

    MMP10 for disorders           About GeneDecksing

    10/24 Novoseek inferred disease relationships for MMP10 gene (see all 24)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    invasive cancer 48.3 1 19601983 (1)
    squamous cell cancer 47.3 2 19601983 (1)
    hnscc 43.4 1 16265652 (1)
    carcinoma squamous cell 42.6 7 12269770 (2), 17587817 (1), 14977049 (1), 11237387 (1)
    tumors 38.3 61 15833553 (5), 17695449 (4), 15720804 (3), 15356104 (2) (see all 20)
    metastasis 37 5 11487270 (1), 15557792 (1), 19921252 (1), 17695449 (1) (see all 5)
    keratoconus 37 1 11778801 (1)
    venous ulcer 34.3 3 11069614 (2), 8776359 (1)
    skin cancer 25.5 3 19601983 (1), 11237387 (1)
    carcinoma 24.1 7 1655673 (2), 7677979 (1), 1793490 (1), 11237387 (1)

    Genetic Association Database (GAD): MMP10
    Human Genome Epidemiology (HuGE) Navigator: MMP10 (12 documents)

    Export disorders for MMP10 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for MMP10 gene, integrated from 9 sources (see all 203):
    (articles sorted by number of sources associating them with MMP10)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Crystal structure of the catalytic domain of human matrix metalloproteinase 10. (PubMed id 15095982)1, 2, 9 Bertini I....Terni B. (2004)
    2. Genetic analysis of polymorphisms in biologically relevant candidate genes in patients with abdominal aortic aneurysms. (PubMed id 15944607)1, 4, 9 Ogata T....Kuivaniemi H. (2005)
    3. A Large-scale genetic association study of esophageal adenocarcinoma risk. (PubMed id 20453000)1, 4 Liu C.Y....Christiani D.C. (2010)
    4. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (2010)
    5. Interferon gamma receptor 2 gene variants are associa ted with liver fibrosis in patients with chronic hepatitis C infection. (PubMed id 20587546)1, 4 Nalpas B....Abel L. (2010)
    6. Identification of fetal and maternal single nucleotid e polymorphisms in candidate genes that predispose to spontaneous preterm labor with intact membranes. (PubMed id 20452482)1, 4 Romero R....Menon R. (2010)
    7. A genetic association study of maternal and fetal can didate genes that predispose to preterm prelabor rupture of membranes (PROM). (PubMed id 20673868)1, 4 Romero R....Menon R. (2010)
    8. Matrix metalloproteinase circulating levels, genetic polymorphisms, and susceptibility to acute myocardial infarction among patients with coronary artery disease. (PubMed id 18035073)1, 4 Hlatky M.A....Go A.S. (2007)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    10. The collagenase gene family in humans consists of at least four members. (PubMed id 2844164)1, 2 Muller D....Breathnach R. (1988)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 4319 HGNC: 7156 AceView: MMP10 Ensembl:ENSG00000166670 euGenes: HUgn4319
    ECgene: MMP10 H-InvDB: MMP10

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for MMP10 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for MMP10 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/mmp10/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for MMP10 gene:
    Search GeneIP for patents involving MMP10

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

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     Proteins for MMP10
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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