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Aliases for MLKL Gene

Aliases for MLKL Gene

  • Mixed Lineage Kinase Domain Like Pseudokinase 2 3 5
  • HMLKL 3 4
  • Mixed Lineage Kinase Domain-Like Protein 3
  • Mixed Lineage Kinase Domain-Like 2

External Ids for MLKL Gene

Previous GeneCards Identifiers for MLKL Gene

  • GC16M073264
  • GC16M060455

Summaries for MLKL Gene

Entrez Gene Summary for MLKL Gene

  • This gene belongs to the protein kinase superfamily. The encoded protein contains a protein kinase-like domain; however, is thought to be inactive because it lacks several residues required for activity. This protein plays a critical role in tumor necrosis factor (TNF)-induced necroptosis, a programmed cell death process, via interaction with receptor-interacting protein 3 (RIP3), which is a key signaling molecule in necroptosis pathway. Inhibitor studies and knockdown of this gene inhibited TNF-induced necrosis. High levels of this protein and RIP3 are associated with inflammatory bowel disease in children. Alternatively spliced transcript variants have been described for this gene. [provided by RefSeq, Sep 2015]

GeneCards Summary for MLKL Gene

MLKL (Mixed Lineage Kinase Domain Like Pseudokinase) is a Protein Coding gene. Among its related pathways are TNF signaling pathway and Dimerization of procaspase-8. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity.

UniProtKB/Swiss-Prot for MLKL Gene

  • Pseudokinase that plays a key role in TNF-induced necroptosis, a programmed cell death process. Activated following phosphorylation by RIPK3, leading to homotrimerization, localization to the plasma membrane and execution of programmed necrosis characterized by calcium influx and plasma membrane damage. Does not have protein kinase activity.

Additional gene information for MLKL Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MLKL Gene

Genomics for MLKL Gene

Regulatory Elements for MLKL Gene

Enhancers for MLKL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H074698 1.3 ENCODE dbSUPER 19.5 +0.8 839 4 HDGF ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 MXD4 NFYC MLKL RFWD3 TMPOP2
GH16H074740 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -42.0 -42043 5 ATF1 FOXA2 SIN3A BRCA1 ZNF2 ZNF121 GLIS2 FOS KLF7 ZNF548 FA2H ENSG00000214331 ENSG00000261079 ENSG00000259972 NPIPB15 ADAT1 MLKL WDR59 ENSG00000260884 RNU6-237P
GH16H074729 1.3 Ensembl ENCODE dbSUPER 12.2 -31.1 -31145 6 FOXA2 SIN3A RARA SMARCC2 RCOR1 EGR2 SMARCC1 ELF1 PPARG SMARCB1 FA2H MLKL RFWD3
GH16H074724 0.8 ENCODE dbSUPER 12.2 -24.6 -24636 3 CTCF CTBP1 RFX1 ZNF143 FOS DPF2 RAD21 FA2H MLKL RFWD3
GH16H074758 0.5 dbSUPER 10.3 -58.8 -58819 2 JUN CREB1 FOS CREM RELA MLKL FA2H
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MLKL on UCSC Golden Path with GeneCards custom track

Promoters for MLKL Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000087904 648 1801 ATF1 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF121 GLIS2 MXD4

Genomic Location for MLKL Gene

Chromosome:
16
Start:
74,671,855 bp from pter
End:
74,701,148 bp from pter
Size:
29,294 bases
Orientation:
Minus strand

Genomic View for MLKL Gene

Genes around MLKL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MLKL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MLKL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MLKL Gene

Proteins for MLKL Gene

  • Protein details for MLKL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NB16-MLKL_HUMAN
    Recommended name:
    Mixed lineage kinase domain-like protein
    Protein Accession:
    Q8NB16
    Secondary Accessions:
    • A6NCE4
    • Q8N6V0

    Protein attributes for MLKL Gene

    Size:
    471 amino acids
    Molecular mass:
    54479 Da
    Quaternary structure:
    • Homotrimer; forms homotrimers on necroptosis induction. Interacts with RIPK3; the interaction is direct. Upon TNF-induced necrosis, forms in complex with PGAM5, RIPK1 and RIPK3. Within this complex, may play a role in the proper targeting of RIPK1/RIPK3 to its downstream effector PGAM5.
    Miscellaneous:
    • Interaction with RIPK3 is species specific: human MLKL only interacts with human RIPK3 and not mouse RIPK3.

    Three dimensional structures from OCA and Proteopedia for MLKL Gene

    Alternative splice isoforms for MLKL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MLKL Gene

Post-translational modifications for MLKL Gene

  • Phosphorylation by RIPK3 induces a conformational switch that is required for necroptosis. It also induces homotrimerization and localization to the plasma membrane.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MLKL Gene

Domains & Families for MLKL Gene

Gene Families for MLKL Gene

IUPHAR :
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Protein Domains for MLKL Gene

Suggested Antigen Peptide Sequences for MLKL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NB16

UniProtKB/Swiss-Prot:

MLKL_HUMAN :
  • The protein kinase domain is catalytically inactive but contains an unusual pseudoactive site with an interaction between Lys-230 and Gln-356 residues. Upon phosphorylation by RIPK3, undergoes an active conformation (By similarity).
  • Belongs to the protein kinase superfamily.
Domain:
  • The protein kinase domain is catalytically inactive but contains an unusual pseudoactive site with an interaction between Lys-230 and Gln-356 residues. Upon phosphorylation by RIPK3, undergoes an active conformation (By similarity).
  • The coiled coil region 2 is responsible for homotrimerization.
Family:
  • Belongs to the protein kinase superfamily.
genes like me logo Genes that share domains with MLKL: view

Function for MLKL Gene

Molecular function for MLKL Gene

UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by necrosulfonamide, a specific inhibitor of necroptosis that targets Cys-86.
UniProtKB/Swiss-Prot Function:
Pseudokinase that plays a key role in TNF-induced necroptosis, a programmed cell death process. Activated following phosphorylation by RIPK3, leading to homotrimerization, localization to the plasma membrane and execution of programmed necrosis characterized by calcium influx and plasma membrane damage. Does not have protein kinase activity.

Phenotypes From GWAS Catalog for MLKL Gene

Gene Ontology (GO) - Molecular Function for MLKL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 NOT protein kinase activity ISS,IEA --
GO:0004871 signal transducer activity IBA --
GO:0005515 protein binding IPI 22265413
GO:0005524 ATP binding IDA,IEA 24219132
GO:0019901 protein kinase binding IEA --
genes like me logo Genes that share ontologies with MLKL: view
genes like me logo Genes that share phenotypes with MLKL: view

Animal Models for MLKL Gene

MGI Knock Outs for MLKL:

Animal Model Products

  • Taconic Biosciences Mouse Models for MLKL

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MLKL
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for MLKL Gene

Localization for MLKL Gene

Subcellular locations from UniProtKB/Swiss-Prot for MLKL Gene

Cytoplasm. Cell membrane. Note=Localizes to the cytoplasm and translocates to the plasma membrane on necroptosis induction.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MLKL gene
Compartment Confidence
plasma membrane 5
cytosol 5
nucleus 4
mitochondrion 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for MLKL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA,IEA 24316671
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane IDA,IEA 24316671
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with MLKL: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for MLKL Gene

Pathways & Interactions for MLKL Gene

genes like me logo Genes that share pathways with MLKL: view

Pathways by source for MLKL Gene

1 Cell Signaling Technology pathway for MLKL Gene
1 BioSystems pathway for MLKL Gene
2 KEGG pathways for MLKL Gene

Gene Ontology (GO) - Biological Process for MLKL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 NOT protein phosphorylation IEA,IBA --
GO:0012501 programmed cell death IEA --
GO:0035556 intracellular signal transduction IBA --
GO:0070207 protein homotrimerization IDA 24316671
GO:0070266 necroptotic process TAS,IEA --
genes like me logo Genes that share ontologies with MLKL: view

No data available for SIGNOR curated interactions for MLKL Gene

Drugs & Compounds for MLKL Gene

(1) Drugs for MLKL Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
ATP Nutra Agonist 0

(1) Additional Compounds for MLKL Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
genes like me logo Genes that share compounds with MLKL: view

Transcripts for MLKL Gene

Unigene Clusters for MLKL Gene

Mixed lineage kinase domain-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for MLKL
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MLKL Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11
SP1: - - -
SP2: -
SP3: - - - - - - - -
SP4:

Relevant External Links for MLKL Gene

GeneLoc Exon Structure for
MLKL
ECgene alternative splicing isoforms for
MLKL

Expression for MLKL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MLKL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MLKL Gene

This gene is overexpressed in Whole Blood (x10.1).

Protein differential expression in normal tissues from HIPED for MLKL Gene

This gene is overexpressed in Peripheral blood mononuclear cells (14.8) and Lymph node (10.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for MLKL Gene



Protein tissue co-expression partners for MLKL Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of MLKL Gene:

MLKL

SOURCE GeneReport for Unigene cluster for MLKL Gene:

Hs.119878

Evidence on tissue expression from TISSUES for MLKL Gene

  • Heart(2.1)
  • Intestine(2.1)
  • Lung(2.1)
genes like me logo Genes that share expression patterns with MLKL: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MLKL Gene

Orthologs for MLKL Gene

This gene was present in the common ancestor of chordates.

Orthologs for MLKL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MLKL 33 34
  • 98.8 (n)
cow
(Bos Taurus)
Mammalia MLKL 34 33
  • 77.47 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Mlkl 33 16 34
  • 75.92 (n)
rat
(Rattus norvegicus)
Mammalia Mlkl 33
  • 75.81 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia MLKL 34
  • 48 (a)
OneToOne
chicken
(Gallus gallus)
Aves MLKL 34 33
  • 54.2 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MLKL 34
  • 41 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mlkl 33
  • 48.97 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 24 (a)
OneToOne
Species where no ortholog for MLKL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MLKL Gene

ENSEMBL:
Gene Tree for MLKL (if available)
TreeFam:
Gene Tree for MLKL (if available)

Paralogs for MLKL Gene

(2) SIMAP similar genes for MLKL Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with MLKL: view

No data available for Paralogs for MLKL Gene

Variants for MLKL Gene

Sequence variations from dbSNP and Humsavar for MLKL Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
VAR_041355 A gastric adenocarcinoma sample
VAR_041357 A gastric adenocarcinoma sample
rs1000071839 -- 74,677,832(+) CGCCA(C/T)CACAC intron-variant
rs1000073029 -- 74,680,701(+) GAGGT(C/T)TCACC intron-variant
rs1000161054 -- 74,675,457(+) CCCCT(A/G)TCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MLKL Gene

Variant ID Type Subtype PubMed ID
esv275138 CNV gain+loss 21479260
esv2760414 CNV gain 21179565

Variation tolerance for MLKL Gene

Residual Variation Intolerance Score: 93.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.08; 38.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MLKL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MLKL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MLKL Gene

Disorders for MLKL Gene

Relevant External Links for MLKL

Genetic Association Database (GAD)
MLKL
Human Genome Epidemiology (HuGE) Navigator
MLKL
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MLKL

No disorders were found for MLKL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MLKL Gene

Publications for MLKL Gene

  1. A tale of two domains - a structural perspective of the pseudokinase, MLKL. (PMID: 26337687) Czabotar PE … Murphy JM (The FEBS journal 2015) 2 3 60
  2. Insights into the evolution of divergent nucleotide-binding mechanisms among pseudokinases revealed by crystal structures of human and mouse MLKL. (PMID: 24219132) Murphy JM … Czabotar PE (The Biochemical journal 2014) 3 4 60
  3. Plasma membrane translocation of trimerized MLKL protein is required for TNF-induced necroptosis. (PMID: 24316671) Cai Z … Liu ZG (Nature cell biology 2014) 3 4 60
  4. Mixed lineage kinase domain-like is a key receptor interacting protein 3 downstream component of TNF-induced necrosis. (PMID: 22421439) Zhao J … Liu ZG (Proceedings of the National Academy of Sciences of the United States of America 2012) 3 4 60
  5. The mitochondrial phosphatase PGAM5 functions at the convergence point of multiple necrotic death pathways. (PMID: 22265414) Wang Z … Wang X (Cell 2012) 3 4 60

Products for MLKL Gene

Sources for MLKL Gene

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