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Aliases for MLIP-IT1 Gene

Subcategory (RNA class) for MLIP-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MLIP-IT1 Gene

  • MLIP Intronic Transcript 1 2 3 5
  • MLIP Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MLIP-IT1 Gene

Previous GeneCards Identifiers for MLIP-IT1 Gene

  • GC00U933915
  • GC06P053864

Summaries for MLIP-IT1 Gene

GeneCards Summary for MLIP-IT1 Gene

MLIP-IT1 (MLIP Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MLIP-IT1 Gene

Genomics for MLIP-IT1 Gene

Regulatory Elements for MLIP-IT1 Gene

Enhancers for MLIP-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F053982 0.9 Ensembl ENCODE 18 -15.3 -15251 3.0 SOX5 SOX13 JUN BHLHE40 CEBPB EP300 ZNF644 JUND STAT3 FOS MLIP MLIP-IT1 LOC101927189 MLIP-AS1 KLHL31 GC06P053984 PIR57668
GH06F053861 1.1 Ensembl ENCODE 11.9 -135.6 -135624 3.7 CTCF SIN3A ZSCAN9 RAD21 ZNF48 ZKSCAN1 ZNF316 GATAD1 ZNF143 SMC3 MLIP-IT1 LOC101927189 KLHL31 LRRC1 PIR32511
GH06F053791 1.4 FANTOM5 ENCODE 8.5 -204.0 -204022 5.8 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC30A9 ZNF207 ZNF263 SP3 SP5 LRRC1 KLHL31 MLIP-IT1 ENSG00000227885 PIR32511
GH06F053961 0.9 Ensembl ENCODE 13.2 -36.8 -36753 1.9 TEAD4 HLF CEBPB FEZF1 DPF2 ZNF843 JUND GATA3 SCRT2 MLIP-IT1 LOC101927189 MLIP LRRC1 ENSG00000227885 PIR57668 GC06P053984
GH06F053825 1 Ensembl ENCODE 11.2 -170.9 -170868 5.6 ELF3 PKNOX1 TFAP4 SAP130 FEZF1 BCL11B ZNF644 TEAD3 ZNF664 SCRT2 LOC101927189 MLIP-IT1 MLIP LRRC1 KLHL31 PIR32511
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MLIP-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MLIP-IT1 Gene

Chromosome:
6
Start:
53,998,890 bp from pter
End:
54,007,152 bp from pter
Size:
8,263 bases
Orientation:
Plus strand

Genomic View for MLIP-IT1 Gene

Genes around MLIP-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MLIP-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MLIP-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MLIP-IT1 Gene

Proteins for MLIP-IT1 Gene

Post-translational modifications for MLIP-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MLIP-IT1 Gene

Domains & Families for MLIP-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MLIP-IT1 Gene

Function for MLIP-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MLIP-IT1 Gene

Localization for MLIP-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MLIP-IT1 Gene

Pathways & Interactions for MLIP-IT1 Gene

SuperPathways for MLIP-IT1 Gene

No Data Available

Interacting Proteins for MLIP-IT1 Gene

Gene Ontology (GO) - Biological Process for MLIP-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MLIP-IT1 Gene

Transcripts for MLIP-IT1 Gene

mRNA/cDNA for MLIP-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MLIP-IT1 Gene

MLIP intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MLIP-IT1 Gene

No ASD Table

Relevant External Links for MLIP-IT1 Gene

GeneLoc Exon Structure for
MLIP-IT1
ECgene alternative splicing isoforms for
MLIP-IT1

Expression for MLIP-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MLIP-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for MLIP-IT1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x11.8), Skin - Sun Exposed (Lower leg) (x11.5), and Esophagus - Mucosa (x4.6).

SOURCE GeneReport for Unigene cluster for MLIP-IT1 Gene:

Hs.571169
genes like me logo Genes that share expression patterns with MLIP-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MLIP-IT1 Gene

Orthologs for MLIP-IT1 Gene

Evolution for MLIP-IT1 Gene

ENSEMBL:
Gene Tree for MLIP-IT1 (if available)
TreeFam:
Gene Tree for MLIP-IT1 (if available)

No data available for Orthologs for MLIP-IT1 Gene

Paralogs for MLIP-IT1 Gene

No data available for Paralogs for MLIP-IT1 Gene

Variants for MLIP-IT1 Gene

Sequence variations from dbSNP and Humsavar for MLIP-IT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10755769 -- 54,002,557(+) CAGAT(A/G)TTGAC intron-variant
rs10948793 -- 54,002,509(+) CAAAA(C/T)TGAAA intron-variant
rs111589241 -- 54,002,843(+) GATAT(A/G)GAGAA intron-variant
rs112152458 -- 54,002,054(+) TACCA(A/T)AATGC intron-variant
rs112415365 -- 54,003,332(+) TCTGT(A/T)GAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MLIP-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv515808 CNV loss 19592680
nsv1034955 CNV gain 25217958
nsv1018062 CNV gain 25217958
esv3609039 CNV loss 21293372
esv2763552 CNV loss 21179565
esv2759431 CNV gain+loss 17122850
dgv3316n106 CNV deletion 24896259

Relevant External Links for MLIP-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MLIP-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MLIP-IT1 Gene

Disorders for MLIP-IT1 Gene

Relevant External Links for MLIP-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MLIP-IT1

No disorders were found for MLIP-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MLIP-IT1 Gene

Publications for MLIP-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MLIP-IT1 Gene

Sources for MLIP-IT1 Gene

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