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Aliases for MLIP-IT1 Gene

Subcategory (RNA class) for MLIP-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MLIP-IT1 Gene

  • MLIP Intronic Transcript 1 2 3 5
  • MLIP Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for MLIP-IT1 Gene

Previous GeneCards Identifiers for MLIP-IT1 Gene

  • GC00U933915
  • GC06P053864

Summaries for MLIP-IT1 Gene

GeneCards Summary for MLIP-IT1 Gene

MLIP-IT1 (MLIP Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MLIP-IT1 Gene

Genomics for MLIP-IT1 Gene

Regulatory Elements for MLIP-IT1 Gene

Enhancers for MLIP-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F054019 0.8 ENCODE 18.6 +21.5 21506 1.3 FEZF1 TRIM28 MLIP-IT1 ERHP2 MLIP-AS1
GH06F053986 0.8 Ensembl 18.5 -11.8 -11808 1.0 HLF RAD21 MLIP-IT1 LOC101927189 MLIP MLIP-AS1 GC06P053984
GH06F053982 1 Ensembl ENCODE 18 -15.3 -15251 3.0 SOX5 SOX13 JUN BHLHE40 CEBPB EP300 ZNF644 JUND STAT3 FOS MLIP MLIP-IT1 LOC101927189 MLIP-AS1 KLHL31 GC06P053984 PIR57668
GH06F053961 1.2 Ensembl ENCODE 13.2 -36.8 -36753 1.9 TEAD4 HLF CEBPB FEZF1 DPF2 ZNF843 JUND GATA3 SCRT2 MLIP-IT1 LOC101927189 MLIP LRRC1 ENSG00000227885 PIR57668 GC06P053984
GH06F053861 0.9 Ensembl ENCODE 11.9 -135.6 -135624 3.7 CTCF SIN3A ZSCAN9 RAD21 ZNF48 ZKSCAN1 ZNF316 GATAD1 ZNF143 SMC3 MLIP-IT1 LOC101927189 KLHL31 LRRC1 PIR32511
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MLIP-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MLIP-IT1 Gene

Chromosome:
6
Start:
53,998,890 bp from pter
End:
54,007,152 bp from pter
Size:
8,263 bases
Orientation:
Plus strand

Genomic View for MLIP-IT1 Gene

Genes around MLIP-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MLIP-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MLIP-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MLIP-IT1 Gene

Proteins for MLIP-IT1 Gene

Post-translational modifications for MLIP-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MLIP-IT1 Gene

Domains & Families for MLIP-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MLIP-IT1 Gene

Function for MLIP-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MLIP-IT1 Gene

Localization for MLIP-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MLIP-IT1 Gene

Pathways & Interactions for MLIP-IT1 Gene

SuperPathways for MLIP-IT1 Gene

No Data Available

Interacting Proteins for MLIP-IT1 Gene

Gene Ontology (GO) - Biological Process for MLIP-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MLIP-IT1 Gene

Transcripts for MLIP-IT1 Gene

mRNA/cDNA for MLIP-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MLIP-IT1 Gene

MLIP intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MLIP-IT1 Gene

No ASD Table

Relevant External Links for MLIP-IT1 Gene

GeneLoc Exon Structure for
MLIP-IT1
ECgene alternative splicing isoforms for
MLIP-IT1

Expression for MLIP-IT1 Gene

mRNA expression in normal human tissues for MLIP-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for MLIP-IT1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x11.8), Skin - Sun Exposed (Lower leg) (x11.5), and Esophagus - Mucosa (x4.6).

SOURCE GeneReport for Unigene cluster for MLIP-IT1 Gene:

Hs.571169
genes like me logo Genes that share expression patterns with MLIP-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MLIP-IT1 Gene

Orthologs for MLIP-IT1 Gene

Evolution for MLIP-IT1 Gene

ENSEMBL:
Gene Tree for MLIP-IT1 (if available)
TreeFam:
Gene Tree for MLIP-IT1 (if available)

No data available for Orthologs for MLIP-IT1 Gene

Paralogs for MLIP-IT1 Gene

No data available for Paralogs for MLIP-IT1 Gene

Variants for MLIP-IT1 Gene

Sequence variations from dbSNP and Humsavar for MLIP-IT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10755769 -- 54,002,557(+) CAGAT(A/G)TTGAC intron-variant
rs10948793 -- 54,002,509(+) CAAAA(C/T)TGAAA intron-variant
rs111589241 -- 54,002,843(+) GATAT(A/G)GAGAA intron-variant
rs112152458 -- 54,002,054(+) TACCA(A/T)AATGC intron-variant
rs112415365 -- 54,003,332(+) TCTGT(A/T)GAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MLIP-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv3316n106 CNV deletion 24896259
esv2759431 CNV gain+loss 17122850
esv2763552 CNV loss 21179565
esv3609039 CNV loss 21293372
nsv1018062 CNV gain 25217958
nsv1034955 CNV gain 25217958
nsv515808 CNV loss 19592680

Relevant External Links for MLIP-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MLIP-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MLIP-IT1 Gene

Disorders for MLIP-IT1 Gene

Relevant External Links for MLIP-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MLIP-IT1

No disorders were found for MLIP-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MLIP-IT1 Gene

Publications for MLIP-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for MLIP-IT1 Gene

Sources for MLIP-IT1 Gene

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