Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MLIP Gene

Aliases for MLIP Gene

  • Muscular LMNA-Interacting Protein 2 3 5
  • Muscular-Enriched A-Type Laminin-Interacting Protein 3 4
  • Muscle-Enriched A-Type Lamin Interacting Protein 2 3
  • C6orf142 3 4
  • Chromosome 6 Open Reading Frame 142 2

External Ids for MLIP Gene

Previous HGNC Symbols for MLIP Gene

  • C6orf142

Previous GeneCards Identifiers for MLIP Gene

  • GC06P053796

Summaries for MLIP Gene

GeneCards Summary for MLIP Gene

MLIP (Muscular LMNA-Interacting Protein) is a Protein Coding gene. GO annotations related to this gene include transcriptional repressor activity, RNA polymerase II transcription factor binding.

Gene Wiki entry for MLIP Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MLIP Gene

Genomics for MLIP Gene

Regulatory Elements for MLIP Gene

Enhancers for MLIP Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MLIP on UCSC Golden Path with GeneCards custom track

Genomic Location for MLIP Gene

Chromosome:
6
Start:
53,929,982 bp from pter
End:
54,266,280 bp from pter
Size:
336,299 bases
Orientation:
Plus strand

Genomic View for MLIP Gene

Genes around MLIP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MLIP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MLIP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MLIP Gene

Proteins for MLIP Gene

  • Protein details for MLIP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VWP3-MLIP_HUMAN
    Recommended name:
    Muscular LMNA-interacting protein
    Protein Accession:
    Q5VWP3
    Secondary Accessions:
    • B7Z2N0
    • D6RE05
    • Q96H08
    • Q96NF7

    Protein attributes for MLIP Gene

    Size:
    458 amino acids
    Molecular mass:
    50429 Da
    Quaternary structure:
    • Interacts with LMNA; may regulate MLIP localization to the nucleus envelope.
    SequenceCaution:
    • Sequence=CAI13927.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for MLIP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MLIP Gene

Proteomics data for MLIP Gene at MOPED

Post-translational modifications for MLIP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MLIP Gene

Domains & Families for MLIP Gene

Protein Domains for MLIP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MLIP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MLIP: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MLIP Gene

Function for MLIP Gene

Phenotypes for MLIP Gene

MGI mutant phenotypes for MLIP:
inferred from 1 alleles
GenomeRNAi human phenotypes for MLIP:
genes like me logo Genes that share phenotypes with MLIP: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MLIP Gene

Localization for MLIP Gene

Subcellular locations from UniProtKB/Swiss-Prot for MLIP Gene

Nucleus. Nucleus envelope. Nucleus, PML body.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MLIP Gene COMPARTMENTS Subcellular localization image for MLIP gene
Compartment Confidence
nucleus 5
cytosol 2
golgi apparatus 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for MLIP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope IEA,ISS --
genes like me logo Genes that share ontologies with MLIP: view

Pathways & Interactions for MLIP Gene

SuperPathways for MLIP Gene

No Data Available

Interacting Proteins for MLIP Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000274897%0d%0a9606.ENSP00000357283%0d%0a
Selected Interacting proteins: ENSP00000274897 for MLIP Gene via STRING

Symbol External ID(s) Details
LMNA

Gene Ontology (GO) - Biological Process for MLIP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MLIP Gene

Drugs & Compounds for MLIP Gene

No Compound Related Data Available

Transcripts for MLIP Gene

Unigene Clusters for MLIP Gene

Muscular LMNA-interacting protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MLIP Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
SP1: - - - - -
SP2: - - -
SP3: - - - - - - - - - -
SP4: - - - -
SP5: - - -
SP6: - - - - -
SP7: -

Relevant External Links for MLIP Gene

GeneLoc Exon Structure for
MLIP
ECgene alternative splicing isoforms for
MLIP

Expression for MLIP Gene

mRNA expression in normal human tissues for MLIP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MLIP Gene

This gene is overexpressed in Muscle - Skeletal (x18.0), Heart - Left Ventricle (x14.7), Nerve - Tibial (x7.3), and Heart - Atrial Appendage (x7.2).

Protein differential expression in normal tissues from HIPED for MLIP Gene

This gene is overexpressed in Heart (51.3) and Fetal heart (14.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MLIP Gene



SOURCE GeneReport for Unigene cluster for MLIP Gene Hs.591803

mRNA Expression by UniProt/SwissProt for MLIP Gene

Q5VWP3-MLIP_HUMAN
Tissue specificity: Primarily expressed in heart and skeletal muscle. Also detected in liver.
genes like me logo Genes that share expression patterns with MLIP: view

Protein tissue co-expression partners for MLIP Gene

Primer Products

Orthologs for MLIP Gene

This gene was present in the common ancestor of chordates.

Orthologs for MLIP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia MLIP 35
  • 80 (n)
  • 72.46 (a)
MLIP 36
  • 31 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC474943 35
  • 85.44 (n)
  • 80.28 (a)
MLIP 36
  • 38 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mlip 35
  • 81.67 (n)
  • 72.51 (a)
Mlip 16
Mlip 36
  • 69 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia MLIP 35
  • 95.26 (n)
  • 93.21 (a)
MLIP 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Mlip 35
  • 78.88 (n)
  • 70.35 (a)
oppossum
(Monodelphis domestica)
Mammalia MLIP 36
  • 29 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MLIP 36
  • 24 (a)
OneToOne
chicken
(Gallus gallus)
Aves MLIP 36
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MLIP 36
  • 21 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CU571255.1 36
  • 9 (a)
OneToOne
Species with no ortholog for MLIP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MLIP Gene

ENSEMBL:
Gene Tree for MLIP (if available)
TreeFam:
Gene Tree for MLIP (if available)

Paralogs for MLIP Gene

No data available for Paralogs for MLIP Gene

Variants for MLIP Gene

Sequence variations from dbSNP and Humsavar for MLIP Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs4712056 - 54,124,728(+) CAGCT(A/G)TCCGG reference, missense
VAR_023382 -
rs17625497 - 54,019,045(+) AAAGC(A/G)TGAAA intron-variant, reference, missense
rs2275769 - 54,230,726(-) GGGAG(A/G)GACTG reference, missense
rs1022929 -- 54,022,637(-) AGTAA(A/T)ACTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MLIP Gene

Variant ID Type Subtype PubMed ID
dgv1955e1 CNV Complex 17122850
nsv5307 CNV Loss 18451855
nsv517189 CNV Loss 19592680
nsv526401 CNV Loss 19592680
nsv523301 CNV Loss 19592680
nsv7901 CNV Gain 18304495
nsv823690 CNV Gain 20364138
nsv823691 CNV Gain 20364138
nsv885885 CNV Loss 21882294
dgv119n17 CNV Loss 16327808
esv34853 CNV Gain 17911159
esv5367 CNV Complex 18987735
dgv1116e199 CNV Deletion 23128226
esv2732099 CNV Deletion 23290073
nsv508407 CNV Loss 20534489
esv5312 CNV Deletion 18987735
dgv53n50 CNV Loss 21212237
nsv514360 CNV Loss 21397061
dgv1045n67 CNV Loss 20364138
nsv821284 CNV Deletion 20802225
nsv820018 CNV Gain 19587683
dgv1117e199 CNV Deletion 23128226
esv990236 CNV Deletion 20482838
esv26113 CNV Gain 19812545
dgv1046n67 CNV Gain 20364138
esv2421881 CNV Deletion 20811451
essv8257 CNV CNV 17122850
essv5979 CNV CNV 17122850
nsv885886 CNV Loss 21882294
nsv885887 CNV Loss 21882294
nsv823699 CNV Gain 20364138
nsv507330 CNV Insertion 20534489

Variation tolerance for MLIP Gene

Gene Damage Index Score: 7.52; 82.30% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for MLIP Gene

Disorders for MLIP Gene

Relevant External Links for MLIP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MLIP

No disorders were found for MLIP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MLIP Gene

Publications for MLIP Gene

  1. Identification of a novel muscle enriched A-type Lamin interacting protein (MLIP). (PMID: 21498514) Ahmady E. … Burgon P.G. (J. Biol. Chem. 2011) 2 3 4 67
  2. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. (PMID: 26871637) Yang X. … Vidal M. (Cell 2016) 3
  3. Cardiomyocyte-enriched protein CIP protects against pathophysiological stresses and regulates cardiac homeostasis. (PMID: 26436652) Huang Z.P. … Wang D.Z. (J. Clin. Invest. 2015) 3
  4. Differential effects of Tat proteins derived from HIV-1 subtypes B and recombinant CRF02_AG on human brain microvascular endothelial cells: implications for blood-brain barrier dysfunction. (PMID: 24667918) Woollard S.M. … Kanmogne G.D. (J. Cereb. Blood Flow Metab. 2014) 3
  5. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3

Products for MLIP Gene

Sources for MLIP Gene

Content