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Aliases for MLIP Gene

Aliases for MLIP Gene

  • Muscular LMNA Interacting Protein 2 3 5
  • Muscular-Enriched A-Type Laminin-Interacting Protein 3 4
  • Muscle-Enriched A-Type Lamin Interacting Protein 2 3
  • Cardiac ISL1-Interacting Protein 2 3
  • C6orf142 3 4
  • Chromosome 6 Open Reading Frame 142 2
  • Muscular LMNA-Interacting Protein 3
  • CIP 3

External Ids for MLIP Gene

Previous HGNC Symbols for MLIP Gene

  • C6orf142

Previous GeneCards Identifiers for MLIP Gene

  • GC06P053796

Summaries for MLIP Gene

GeneCards Summary for MLIP Gene

MLIP (Muscular LMNA Interacting Protein) is a Protein Coding gene. GO annotations related to this gene include transcriptional repressor activity, RNA polymerase II transcription factor binding.

Gene Wiki entry for MLIP Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MLIP Gene

Genomics for MLIP Gene

Regulatory Elements for MLIP Gene

Enhancers for MLIP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F053982 1 Ensembl ENCODE 23.1 +53.7 53658 3.0 SOX5 SOX13 JUN BHLHE40 CEBPB EP300 ZNF644 JUND STAT3 FOS MLIP MLIP-IT1 LOC101927189 MLIP-AS1 KLHL31 GC06P053984 PIR57668
GH06F054059 0.2 Ensembl 18.7 +130.3 130284 0.9 HIC1 JUN KLF4 MLIP MLIP-AS1 ERHP2
GH06F054085 0.6 ENCODE 18 +156.0 156041 2.6 ZNF146 FOS MLIP MLIP-AS1 GC06P054160
GH06F054074 0.4 ENCODE 18 +144.7 144671 1.2 ATF3 SCRT2 HNF4G RAD21 YY1 MLIP MLIP-AS1 ERHP2
GH06F053961 1.2 Ensembl ENCODE 12 +32.2 32156 1.9 TEAD4 HLF CEBPB FEZF1 DPF2 ZNF843 JUND GATA3 SCRT2 MLIP-IT1 LOC101927189 MLIP LRRC1 ENSG00000227885 PIR57668 GC06P053984
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MLIP on UCSC Golden Path with GeneCards custom track

Genomic Location for MLIP Gene

Chromosome:
6
Start:
53,929,982 bp from pter
End:
54,266,280 bp from pter
Size:
336,299 bases
Orientation:
Plus strand

Genomic View for MLIP Gene

Genes around MLIP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MLIP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MLIP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MLIP Gene

Proteins for MLIP Gene

  • Protein details for MLIP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VWP3-MLIP_HUMAN
    Recommended name:
    Muscular LMNA-interacting protein
    Protein Accession:
    Q5VWP3
    Secondary Accessions:
    • B7Z2N0
    • D6RE05
    • Q96H08
    • Q96NF7

    Protein attributes for MLIP Gene

    Size:
    458 amino acids
    Molecular mass:
    50429 Da
    Quaternary structure:
    • Interacts with LMNA; may regulate MLIP localization to the nucleus envelope.
    SequenceCaution:
    • Sequence=CAI13927.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for MLIP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MLIP Gene

Post-translational modifications for MLIP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for MLIP Gene

Domains & Families for MLIP Gene

Protein Domains for MLIP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MLIP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MLIP: view

No data available for Gene Families and UniProtKB/Swiss-Prot for MLIP Gene

Function for MLIP Gene

Phenotypes for MLIP Gene

genes like me logo Genes that share phenotypes with MLIP: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MLIP Gene

Localization for MLIP Gene

Subcellular locations from UniProtKB/Swiss-Prot for MLIP Gene

Nucleus. Nucleus envelope. Nucleus, PML body.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MLIP Gene COMPARTMENTS Subcellular localization image for MLIP gene
Compartment Confidence
nucleus 5
cytosol 2
golgi apparatus 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for MLIP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope ISS --
GO:0016605 PML body ISS --
GO:0031981 nuclear lumen ISS --
genes like me logo Genes that share ontologies with MLIP: view

Pathways & Interactions for MLIP Gene

SuperPathways for MLIP Gene

No Data Available

Interacting Proteins for MLIP Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000274897%0d%0a9606.ENSP00000357283%0d%0a
Selected Interacting proteins: Q5VWP3-MLIP_HUMAN ENSP00000274897 for MLIP Gene via IID STRING

Gene Ontology (GO) - Biological Process for MLIP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MLIP Gene

Transcripts for MLIP Gene

Unigene Clusters for MLIP Gene

Muscular LMNA-interacting protein:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MLIP Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
SP1: - - - - -
SP2: - - -
SP3: - - - - - - - - - -
SP4: - - - -
SP5: - - -
SP6: - - - - -
SP7: -

Relevant External Links for MLIP Gene

GeneLoc Exon Structure for
MLIP
ECgene alternative splicing isoforms for
MLIP

Expression for MLIP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MLIP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MLIP Gene

This gene is overexpressed in Muscle - Skeletal (x18.0), Heart - Left Ventricle (x14.7), Nerve - Tibial (x7.3), and Heart - Atrial Appendage (x7.2).

Protein differential expression in normal tissues from HIPED for MLIP Gene

This gene is overexpressed in Heart (51.3) and Fetal heart (14.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for MLIP Gene



Protein tissue co-expression partners for MLIP Gene

NURSA nuclear receptor signaling pathways regulating expression of MLIP Gene:

MLIP

SOURCE GeneReport for Unigene cluster for MLIP Gene:

Hs.591803

mRNA Expression by UniProt/SwissProt for MLIP Gene:

Q5VWP3-MLIP_HUMAN
Tissue specificity: Primarily expressed in heart and skeletal muscle. Also detected in liver.
genes like me logo Genes that share expression patterns with MLIP: view

Primer Products

Orthologs for MLIP Gene

This gene was present in the common ancestor of chordates.

Orthologs for MLIP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MLIP 34 35
  • 95.26 (n)
dog
(Canis familiaris)
Mammalia LOC474943 34
  • 85.44 (n)
MLIP 35
  • 38 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mlip 34 16 35
  • 81.67 (n)
cow
(Bos Taurus)
Mammalia MLIP 34 35
  • 80 (n)
rat
(Rattus norvegicus)
Mammalia Mlip 34
  • 78.88 (n)
oppossum
(Monodelphis domestica)
Mammalia MLIP 35
  • 29 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MLIP 35
  • 24 (a)
OneToOne
chicken
(Gallus gallus)
Aves MLIP 35
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MLIP 35
  • 21 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CU571255.1 35
  • 9 (a)
OneToOne
Species where no ortholog for MLIP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MLIP Gene

ENSEMBL:
Gene Tree for MLIP (if available)
TreeFam:
Gene Tree for MLIP (if available)

Paralogs for MLIP Gene

No data available for Paralogs for MLIP Gene

Variants for MLIP Gene

Sequence variations from dbSNP and Humsavar for MLIP Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10046170 -- 54,190,789(+) GTCAA(A/G)GAttt intron-variant, upstream-variant-2KB
rs10046350 -- 54,190,790(+) TCAAA(A/G)Atttt intron-variant, upstream-variant-2KB
rs10046453 -- 54,190,720(+) TTTTG(C/T)ATTTC intron-variant, upstream-variant-2KB
rs10080252 -- 54,230,175(+) ACCCA(C/T)CCTTC intron-variant
rs10080402 -- 54,026,842(+) AGACT(G/T)GTAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MLIP Gene

Variant ID Type Subtype PubMed ID
dgv1045n67 CNV loss 20364138
dgv1046n67 CNV gain 20364138
dgv10662n54 CNV gain+loss 21841781
dgv10663n54 CNV gain 21841781
dgv10664n54 CNV gain 21841781
dgv10665n54 CNV gain 21841781
dgv1116e199 CNV deletion 23128226
dgv1117e199 CNV deletion 23128226
dgv119n17 CNV loss 16327808
dgv1774e212 CNV gain 25503493
dgv1775e212 CNV loss 25503493
dgv1776e212 CNV loss 25503493
dgv3317n106 CNV deletion 24896259
dgv390e215 CNV deletion 23714750
dgv53n50 CNV loss 21212237
esv2421881 CNV deletion 20811451
esv26113 CNV gain 19812545
esv2732099 CNV deletion 23290073
esv2759431 CNV gain+loss 17122850
esv2762593 CNV loss 21179565
esv2763985 CNV gain 21179565
esv34853 CNV gain 17911159
esv3539747 CNV deletion 23714750
esv3571069 CNV loss 25503493
esv3609040 CNV gain 21293372
esv3609041 CNV gain 21293372
esv3609042 CNV loss 21293372
esv3609043 CNV gain 21293372
esv3609045 CNV loss 21293372
esv3609046 CNV loss 21293372
esv5312 CNV loss 18987735
esv5367 OTHER complex 18987735
esv990236 CNV deletion 20482838
nsv1017633 CNV gain 25217958
nsv1018062 CNV gain 25217958
nsv1020329 CNV loss 25217958
nsv1025090 CNV loss 25217958
nsv1027036 CNV loss 25217958
nsv1030908 CNV loss 25217958
nsv1034955 CNV gain 25217958
nsv1073558 CNV deletion 25765185
nsv1074575 CNV deletion 25765185
nsv1112125 CNV deletion 24896259
nsv1142463 CNV tandem duplication 24896259
nsv473642 CNV novel sequence insertion 20440878
nsv507330 OTHER sequence alteration 20534489
nsv508407 CNV deletion 20534489
nsv514360 CNV loss 21397061
nsv517189 CNV loss 19592680
nsv523301 CNV loss 19592680
nsv526401 CNV loss 19592680
nsv5307 CNV deletion 18451855
nsv603110 CNV gain 21841781
nsv603111 CNV loss 21841781
nsv603112 CNV gain 21841781
nsv603113 CNV loss 21841781
nsv7901 CNV gain 18304495
nsv820018 CNV gain 19587683
nsv821284 CNV deletion 20802225
nsv823690 CNV gain 20364138
nsv823691 CNV gain 20364138
nsv823699 CNV gain 20364138
nsv970716 CNV deletion 23825009
nsv981145 CNV duplication 23825009

Variation tolerance for MLIP Gene

Gene Damage Index Score: 7.52; 82.30% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for MLIP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MLIP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MLIP Gene

Disorders for MLIP Gene

Relevant External Links for MLIP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MLIP

No disorders were found for MLIP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MLIP Gene

Publications for MLIP Gene

  1. Identification of a novel muscle enriched A-type Lamin interacting protein (MLIP). (PMID: 21498514) Ahmady E. … Burgon P.G. (J. Biol. Chem. 2011) 2 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  5. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. (PMID: 26871637) Yang X. … Vidal M. (Cell 2016) 3 64

Products for MLIP Gene

Sources for MLIP Gene

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