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Aliases for MKRN9P Gene

Subcategory (RNA class) for MKRN9P Gene

lncRNA

Aliases for MKRN9P Gene

  • Makorin Ring Finger Protein 9, Pseudogene 2 3
  • Makorin Ring Finger Protein Pseudogene 6 2 3 4
  • ZNF127L3 3 4
  • MKRNP6 3 4
  • MKRN5 3 4
  • MKRN9 3 4
  • RNF65 3 4
  • Makorin, Ring Finger Protein, 1 Pseudogene 3
  • Makorin Ring Finger Protein 1 Pseudogene 3
  • Makorin Ring Finger Protein Pseudogene 9 4
  • Makorin, Ring Finger Protein, 5 3
  • Makorin, Ring Finger Protein, 9 3
  • Putative RING Finger Protein 65 4
  • Zinc Finger Protein 127-Like 3 3
  • Makorin Ring Finger Protein 5 2

External Ids for MKRN9P Gene

ORGUL Members for MKRN9P Gene

Previous HGNC Symbols for MKRN9P Gene

  • ZNF127L3
  • MKRN5
  • MKRNP6

Previous GeneCards Identifiers for MKRN9P Gene

  • GC12M088179
  • GC12M088180
  • GC12M085243
  • GC12M088181

Summaries for MKRN9P Gene

GeneCards Summary for MKRN9P Gene

MKRN9P (Makorin Ring Finger Protein 9, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MKRN9P Gene

Genomics for MKRN9P Gene

Genomic Location for MKRN9P Gene

Start:
87,782,163 bp from pter
End:
87,784,711 bp from pter
Size:
2,549 bases
Orientation:
Minus strand

Genomic View for MKRN9P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MKRN9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MKRN9P Gene

No data available for Regulatory Elements for MKRN9P Gene

Proteins for MKRN9P Gene

  • Protein details for MKRN9P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV0-MKRN5_HUMAN
    Recommended name:
    Putative makorin-5
    Protein Accession:
    Q6NVV0
    Secondary Accessions:

    Protein attributes for MKRN9P Gene

    Size:
    33 amino acids
    Molecular mass:
    3805 Da
    Quaternary structure:
    No Data Available

neXtProt entry for MKRN9P Gene

Proteomics data for MKRN9P Gene at MOPED

Post-translational modifications for MKRN9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKRN9P Gene

Domains for MKRN9P Gene

Gene Families for MKRN9P Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers

Protein Domains for MKRN9P Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for MKRN9P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MKRN9P: view

No data available for UniProtKB/Swiss-Prot for MKRN9P Gene

Function for MKRN9P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MKRN9P Gene

Localization for MKRN9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MKRN9P Gene

Pathways for MKRN9P Gene

SuperPathways for MKRN9P Gene

No Data Available

Interacting Proteins for MKRN9P Gene

Gene Ontology (GO) - Biological Process for MKRN9P Gene

None

No data available for Pathways by source for MKRN9P Gene

Transcripts for MKRN9P Gene

mRNA/cDNA for MKRN9P Gene

(1) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MKRN9P Gene

Makorin ring finger protein 9, pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MKRN9P

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MKRN9P Gene

No ASD Table

Relevant External Links for MKRN9P Gene

GeneLoc Exon Structure for
MKRN9P
ECgene alternative splicing isoforms for
MKRN9P

Expression for MKRN9P Gene

mRNA expression in normal human tissues for MKRN9P Gene

mRNA differential expression in normal tissues according to GTEx for MKRN9P Gene

This gene is overexpressed in Testis (45.8).

SOURCE GeneReport for Unigene cluster for MKRN9P Gene Hs.572212

genes like me logo Genes that share expressions with MKRN9P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for MKRN9P Gene

Orthologs for MKRN9P Gene

Evolution for MKRN9P Gene

ENSEMBL:
Gene Tree for MKRN9P (if available)
TreeFam:
Gene Tree for MKRN9P (if available)

No data available for Orthologs for MKRN9P Gene

Paralogs for MKRN9P Gene

Selected SIMAP similar genes for MKRN9P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with MKRN9P: view

No data available for Paralogs for MKRN9P Gene

Variants for MKRN9P Gene

Sequence variations from dbSNP and Humsavar for MKRN9P Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs981293 -- 87,786,638(+) AACAT(A/C)CTTCA upstream-variant-2KB
rs1614694 -- 87,785,104(+) AACAC(A/G)GGTTC upstream-variant-2KB
rs1656806 -- 87,786,334(+) CTAAA(C/G)TATTC upstream-variant-2KB
rs1656807 -- 87,786,605(+) AAATG(G/T)TGTAT upstream-variant-2KB
rs1675574 -- 87,784,014(+) GAAGG(C/T)GCAGT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MKRN9P Gene

Variant ID Type Subtype PubMed ID
nsv832477 CNV Loss 17160897

Relevant External Links for MKRN9P Gene

HapMap Linkage Disequilibrium report
MKRN9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MKRN9P Gene

Disorders for MKRN9P Gene

No disorders were found for MKRN9P Gene.

No data available for UniProtKB/Swiss-Prot for MKRN9P Gene

Publications for MKRN9P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for MKRN9P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MKRN9P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MKRN9P
    • Block miRNA regulation of MKRN9P using miScript Target Protectors

    Sources for MKRN9P Gene

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