Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MKRN7P Gene

Subcategory (RNA class) for MKRN7P Gene

lncRNA

Aliases for MKRN7P Gene

  • Makorin Ring Finger Protein 7, Pseudogene 2 3 5
  • Makorin Ring Finger Protein Pseudogene 3 2 3
  • Zinc Finger Protein 127-Like 5 3
  • DJ981L23.2 3
  • ZNF127L5 3
  • MKRNP3 3

External Ids for MKRN7P Gene

ORGUL Members for MKRN7P Gene

Previous HGNC Symbols for MKRN7P Gene

  • ZNF127L5
  • MKRNP3

Previous GeneCards Identifiers for MKRN7P Gene

  • GC20M045093

Summaries for MKRN7P Gene

GeneCards Summary for MKRN7P Gene

MKRN7P (Makorin Ring Finger Protein 7, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for MKRN7P Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MKRN7P Gene

Genomics for MKRN7P Gene

Regulatory Elements for MKRN7P Gene

Enhancers for MKRN7P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F046458 0.2 ENCODE 16.7 +6.1 6121 1.5 SIX4 NRF1 ZFP64 BHLHE40 MAX CEBPG DPF2 JUND CTBP1 ZFHX2 MKRN7P ELMO2 GC20M046427
GH20F046405 0.4 ENCODE 15.7 +58.7 58698 2.7 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 FOS KLF13 ZNF263 CEBPZ MKRN7P ELMO2 NCOA5 TP53RK LOC105372633 GC20M046352
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MKRN7P on UCSC Golden Path with GeneCards custom track

Genomic Location for MKRN7P Gene

Chromosome:
20
Start:
46,463,660 bp from pter
End:
46,465,292 bp from pter
Size:
1,633 bases
Orientation:
Minus strand

Genomic View for MKRN7P Gene

Genes around MKRN7P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKRN7P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKRN7P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MKRN7P Gene

ORGUL Member Location for MKRN7P Gene

ORGUL Member Location for MKRN7P gene

Proteins for MKRN7P Gene

Post-translational modifications for MKRN7P Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKRN7P Gene

Domains & Families for MKRN7P Gene

Gene Families for MKRN7P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MKRN7P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MKRN7P Gene

Function for MKRN7P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKRN7P Gene

Localization for MKRN7P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MKRN7P Gene

Pathways & Interactions for MKRN7P Gene

SuperPathways for MKRN7P Gene

No Data Available

Interacting Proteins for MKRN7P Gene

Gene Ontology (GO) - Biological Process for MKRN7P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKRN7P Gene

Transcripts for MKRN7P Gene

mRNA/cDNA for MKRN7P Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MKRN7P Gene

Makorin ring finger protein 7, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MKRN7P Gene

No ASD Table

Relevant External Links for MKRN7P Gene

GeneLoc Exon Structure for
MKRN7P
ECgene alternative splicing isoforms for
MKRN7P

Expression for MKRN7P Gene

mRNA expression in normal human tissues for MKRN7P Gene

mRNA differential expression in normal tissues according to GTEx for MKRN7P Gene

This gene is overexpressed in Brain - Cerebellum (x4.9) and Brain - Cerebellar Hemisphere (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of MKRN7P Gene:

MKRN7P

SOURCE GeneReport for Unigene cluster for MKRN7P Gene:

Hs.717103
genes like me logo Genes that share expression patterns with MKRN7P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MKRN7P Gene

Orthologs for MKRN7P Gene

Evolution for MKRN7P Gene

ENSEMBL:
Gene Tree for MKRN7P (if available)
TreeFam:
Gene Tree for MKRN7P (if available)

No data available for Orthologs for MKRN7P Gene

Paralogs for MKRN7P Gene

No data available for Paralogs for MKRN7P Gene

Variants for MKRN7P Gene

Sequence variations from dbSNP and Humsavar for MKRN7P Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000383 -- 46,464,282(-) CCAGG(C/T)GGGAG nc-transcript-variant, utr-variant-3-prime
rs111543450 -- 46,466,512(+) AGAGT(C/T)TCGCT intron-variant, upstream-variant-2KB
rs113918702 -- 46,465,933(+) TGAGC(A/G)ACAGA intron-variant, upstream-variant-2KB
rs114447667 -- 46,466,515(+) GTCTC(A/C/G)CTCCG intron-variant, upstream-variant-2KB
rs11474033 -- 46,464,691(+) GCAGC(-/TTCT)CTTGT nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MKRN7P Gene

Variant ID Type Subtype PubMed ID
nsv1058633 CNV loss 25217958
nsv833994 CNV gain 17160897

Relevant External Links for MKRN7P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKRN7P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MKRN7P Gene

Disorders for MKRN7P Gene

Relevant External Links for MKRN7P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MKRN7P

No disorders were found for MKRN7P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKRN7P Gene

Publications for MKRN7P Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for MKRN7P Gene

Sources for MKRN7P Gene

Content
Loading form....