MKRN2 Gene
protein-coding GIFtS: 51
GCID: GC03P012598
|
|
makorin ring finger protein 2
| |
Aliases
for MKRN2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Makorin Ring Finger Protein 21 2 | | Makorin RING Zinc-Finger Protein 22 | | RNF621 2 3 | | Probable E3 Ubiquitin-Protein Ligase Makorin-22 | | RING Finger Protein 622 3 | | EC 6.3.2.-3 | | HSPC0701 | | |
Export aliases for MKRN2 gene to outside databasesPrevious GC identifers: GC03P012527 GC03P012573 GC03P012533 |
Summaries
for MKRN2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for MKRN2:
This gene encodes a probable E3 ubiquitin ligase containing several zinc finger domains, that is a member of themakorin RING zinc-finger protein family. This gene overlaps the v-raf-1 murine leukemia viral oncogene homolog 1(RAF1) gene in an antisense orientation and may have a co-regulatory function with RAF1. Alternative splicing resultsin multiple transcript variants. (provided by RefSeq, Nov 2012)
UniProtKB/Swiss-Prot: MKRN2_HUMAN, Q9H000Function: E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins (Bysimilarity)
|
Genomic Views
for MKRN2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000003.11 NC_018914.1 NT_022517.18
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the MKRN2 gene promoter:
FOXF2 Nkx2-2 Bach2 POU3F2 FOXC1 IRF-7A FOXO1a NF-kappaB1 Pax-4a FOXO1
Other transcription factors
Search SABiosciences Chromatin IP Primers for MKRN2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MKRN2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3p25 Ensembl cytogenetic band: 3p25.2 HGNC cytogenetic band: 3p25MKRN2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03P012598: view genomic region
(about GC identifiers)
Start:
|
12,598,513 bp from pter |
End:
|
12,625,212 bp from pter |
Size:
|
26,700 bases |
Orientation:
|
plus strand |
|
Proteins
for MKRN2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: MKRN2_HUMAN, Q9H000 (See
protein sequence)Recommended Name: Probable E3 ubiquitin-protein ligase makorin-2 Size: 416 amino acids; 46940 Da
Miscellaneous: Partially overlaps and is antisense to the RAF1 proto-oncogene
Secondary accessions: A6NIA2 B3KRC5 Q8N391 Q96BD4 Q9BUY2 Q9NRY1Explore the universe of human proteins at neXtProt for MKRN2: NX_Q9H000
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9H000
MKRN2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001258636.1 NP_054879.3
ENSEMBL proteins: ENSP00000170447 ENSP00000396340 ENSP00000397983
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table
MKRN2 for ontologies About GeneDecksing
MKRN2 Antibody Products:
Assay Products for MKRN2: |
Protein
Domains /
Families
for MKRN2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
MKRN2 for domains About GeneDecksing
5/6 InterPro domains/families (see all 6):Graphical View of Domain Structure for InterPro Entry Q9H000ProtoNet protein and cluster: Q9H000 2 Blocks protein families: IPB000571 Zn-finger IPB001841 Zn-finger
UniProtKB/Swiss-Prot: MKRN2_HUMAN, Q9H000Similarity: Contains 4 C3H1-type zinc fingersSimilarity: Contains 1 RING-type zinc finger |
Function
for MKRN2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: MKRN2_HUMAN, Q9H000Function: E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins (Bysimilarity)Enzyme Number (IUBMB): EC 6.3.2.-1
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for MKRN2 (see all 2)
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MKRN2 |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
MKRN2 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for MKRN2:
|
Pathways & Interactions
for MKRN2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
UniProtKB/Swiss-Prot: MKRN2_HUMAN, Q9H000Pathway: Protein modification; protein ubiquitinationInteractions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MKRN2
STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)
4 Interacting proteins for MKRN2 (Q9H0003 ENSP000001704474) via UniProtKB, MINT, STRING, and/or I2D About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- | | GO:0016567 | protein ubiquitination |
IEA | -- |
MKRN2 for ontologies About GeneDecksing
|
Drugs & Compounds
for MKRN2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for MKRN2
Search CenterWatch for drugs/clinical trials and news about MKRN2
|
Transcripts
for MKRN2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for MKRN2 gene (2 alternative transcripts): NM_001271707.1 NM_014160.4 Unigene Cluster for MKRN2: Makorin ring finger protein 2 Hs.591666 [show with all ESTs]Unigene Representative Sequence: NM_0141603 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000170447(uc003bxd.3 uc011aus.2) ENST00000411987 ENST00000448482
Clone
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Additional cDNA sequence: AF302084.1 AK091318.1 AK298463.1 AL834512.1 BC001799.2 BC015715.1 12 DOTS entries: DT.92451812 DT.100669838 DT.100669840 DT.95208619 DT.92451816 DT.100669851 DT.87008986 DT.100669848 DT.120918125 DT.120918142 DT.120918155 DT.97769875 24/275 AceView cDNA sequences (see all 275): BQ006805 AK091318 BG824733 AA523200 AA514346 CD366490 BQ016628 BQ185860 CR610136 AA047830 BC015715 AW043645 AW087673 AW005598 CR626820 BX281593 AK124449 AI243676 R82874 AI360908 AA325297 CA773473 AL515366 BM786407
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for MKRN2 About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 |
|---|
|
| SP1: | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | - | | | | | | - | | - | | - | | | | | | | | | | | | |
| SP4: | | | | | | | - | | - | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for MKRN2
|
Expression
for MKRN2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| MKRN2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCACCCAAGG
About this image
See MKRN2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for MKRN2
SOURCE GeneReport for Unigene cluster: Hs.591666
UniProtKB/Swiss-Prot: MKRN2_HUMAN, Q9H000Tissue specificity: Widely expressed
SABiosciences Expression via Pathway-Focused PCR Array including MKRN2:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for MKRN2
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MKRN2 |
Orthologs
for MKRN2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for MKRN2 gene from 8/26 species (see all 26) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
MKRN21 |
makorin ring finger protein 2 |
73.33(n)
75.12(a) |
|
374162 NM_204288.1 NP_989619.1 |
lizard
(Anolis carolinensis) |
Reptilia |
MKRN26 |
-- |
73(a) |
1 ↔ 1 |
2(158935889-158957033) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.161552 |
Xenopus laevis transcribed sequence with moderate similarity more |
75(n) |
|
BJ081466.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
mkrn22 |
makorin, ring finger protein, 2 |
74.41(n) |
|
170783 AF277172.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
CG124773 |
-- |
45(a)
(best of 4) |
|
75D7 -- |
worm
(Caenorhabditis elegans) |
Secernentea |
Y55F3AM.66 |
Protein Y55F3AM.6, isoform a |
30(a) |
1 → many |
IV(992289-997652) |
thale cress
(Arabidopsis thaliana) |
eudicotyledons |
AT3G085051 |
E3 ubiquitin-protein ligase makorin |
49.14(n)
40.97(a) |
|
819998 NM_180209.1 NP_850540.1 |
rice
(Oryza sativa) |
Liliopsida |
Os06g03187001 |
hypothetical protein |
48.67(n)
39.43(a) |
|
4340884 NM_001064040.1 NP_001057505.1 |
ENSEMBL Gene Tree for MKRN2 (if available)
TreeFam Gene Tree for MKRN2 (if available) |
Paralogs
for MKRN2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for MKRN2 gene
- MKRN32 MKRN12
3 SIMAP similar genes for MKRN2 using alignment to 3 protein entries: MKRN2_HUMAN (see all proteins):MKRN1 MKRN4P MKRN3
MKRN2 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for MKRN2
PGOHUM00000243604
|
Genomic Variants
for MKRN2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for MKRN2 (12598513 - 12625212 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for MKRN2
2 CNVs: 53782 8414
1 Inversion: 37239 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing MKRN2 |
|
Disorders
/ Diseases
for MKRN2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
MKRN2 for disorders About GeneDecksing
OMIM gene information: 608426
OMIM disorders: --
3  diseases for MKRN2: About MalaCardschronic lymphocytic leukemia lymphocytic leukemia leukemia
Human Genome Epidemiology (HuGE) Navigator: MKRN2 (2 documents)
Export disorders for MKRN2 gene to outside databases
|
Publications
for MKRN2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for MKRN2 gene, integrated from 9 sources (see all 16):
(articles sorted by number of sources associating them with MKRN2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Phylogenetic conservation of the makorin-2 gene, encoding a multiple zinc-finger protein, antisense to the raf1 proto-oncogene. (PubMed id 11597136)1, 2, 3, 9 Gray T.A.... Nicholls R.D. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)1, 2 Zhang Q.-H.... Chen Z. (2000)
- Systematic analysis of dimeric E3-RING interactions re veals increased combinatorial complexity in human ubiquitination networks. (PubMed id 22493164)1 Woodsmith J....Sanderson C.M. (2012)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
- Activity-based chemical proteomics accelerates inhibi tor development for deubiquitylating enzymes. (PubMed id 22118674)1 Altun M....Kessler B.M. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- Single nucleotide polymorphisms of matrix metalloprot einase 9 (MMP-9) and tumour protein 73 (TP73) interact with Epstein Barr virus in chronic lymphocytic leukemia: results from the European case-control study E piLymph. (PubMed id 21048031)1 Casabonne D....de Sanjose S. (2010)
- The vertebrate makorin ubiquitin ligase gene family ha s been shaped by large-scale duplication and retroposition from an ancestral gon ad-specific, maternal-effect gene. (PubMed id 21172006)1 Bohne A....Volff J.N. (2010)
|
External Searches for MKRN2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing MKRN2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing MKRN2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing MKRN2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for MKRN2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for MKRN2 gene:
Search GeneIP for patents involving MKRN2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for MKRN2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for MKRN2 |
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