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Aliases for MKLN1-AS Gene

Subcategory (RNA class) for MKLN1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MKLN1-AS Gene

  • MKLN1 Antisense RNA 2 3 5
  • MKLN1 Antisense RNA 2 2 3
  • MKLN1-AS2 3

External Ids for MKLN1-AS Gene

Previous HGNC Symbols for MKLN1-AS Gene

  • MKLN1-AS2

Previous GeneCards Identifiers for MKLN1-AS Gene

  • GC07M131001

Summaries for MKLN1-AS Gene

GeneCards Summary for MKLN1-AS Gene

MKLN1-AS (MKLN1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MKLN1-AS Gene

Genomics for MKLN1-AS Gene

Regulatory Elements for MKLN1-AS Gene

Enhancers for MKLN1-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F131104 1.6 FANTOM5 ENCODE 10.7 +219.8 219820 8.6 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 MKLN1-AS ENSG00000270953 MKLN1 RNU6-1010P GC07M131055
GH07F130908 1.6 FANTOM5 ENCODE 10.3 +412.2 412197 15.2 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 RNU6-1010P LINC-PINT MKLN1-AS ENSG00000233559 TMEM209 MKLN1 GC07P130916 PIR43822
GH07F131218 1.3 Ensembl ENCODE 10.5 +108.7 108722 2.2 ATF1 PKNOX1 SIN3A ZNF48 YY1 SLC30A9 ELK1 ZNF548 FOS SP3 LINC-PINT MKLN1 MKLN1-AS GC07M131204 RPL27P11
GH07F131511 1.2 Ensembl ENCODE 10.7 -184.9 -184875 2.9 ATF1 ARNT SIN3A ARID4B ZNF48 ZNF2 ZNF143 YY2 ZHX2 MIER2 MKLN1-AS RPL31P36 ENSG00000273489
GH07F131652 1.2 Ensembl ENCODE 10.3 -325.8 -325837 2.5 ZNF493 ZNF76 GLI4 RAD21 CBX5 ZNF354C ZNF207 ZNF143 KLF7 ZNF548 MKLN1-AS GC07P131655 PIR56881
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MKLN1-AS on UCSC Golden Path with GeneCards custom track

Promoters for MKLN1-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000069193 22 2401 HDGF PKNOX1 ARNT WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF416

Genomic Location for MKLN1-AS Gene

Chromosome:
7
Start:
131,309,744 bp from pter
End:
131,328,222 bp from pter
Size:
18,479 bases
Orientation:
Minus strand

Genomic View for MKLN1-AS Gene

Genes around MKLN1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKLN1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKLN1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MKLN1-AS Gene

Proteins for MKLN1-AS Gene

Post-translational modifications for MKLN1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKLN1-AS Gene

Domains & Families for MKLN1-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MKLN1-AS Gene

Function for MKLN1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKLN1-AS Gene

Localization for MKLN1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MKLN1-AS Gene

Pathways & Interactions for MKLN1-AS Gene

SuperPathways for MKLN1-AS Gene

No Data Available

Interacting Proteins for MKLN1-AS Gene

Gene Ontology (GO) - Biological Process for MKLN1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKLN1-AS Gene

Transcripts for MKLN1-AS Gene

mRNA/cDNA for MKLN1-AS Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MKLN1-AS Gene

No ASD Table

Relevant External Links for MKLN1-AS Gene

GeneLoc Exon Structure for
MKLN1-AS
ECgene alternative splicing isoforms for
MKLN1-AS

Expression for MKLN1-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MKLN1-AS Gene

genes like me logo Genes that share expression patterns with MKLN1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MKLN1-AS Gene

Orthologs for MKLN1-AS Gene

Evolution for MKLN1-AS Gene

ENSEMBL:
Gene Tree for MKLN1-AS (if available)
TreeFam:
Gene Tree for MKLN1-AS (if available)

No data available for Orthologs for MKLN1-AS Gene

Paralogs for MKLN1-AS Gene

No data available for Paralogs for MKLN1-AS Gene

Variants for MKLN1-AS Gene

Sequence variations from dbSNP and Humsavar for MKLN1-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10233294 -- 131,324,249(+) GTCTA(C/G)ACCTT intron-variant
rs10238605 -- 131,313,171(+) attta(A/C)aaact intron-variant
rs10255697 -- 131,310,005(+) caggc(A/G)tgagc intron-variant, nc-transcript-variant
rs10264049 -- 131,312,253(+) cctga(A/C)ctcag intron-variant
rs10268409 -- 131,313,347(+) gactt(C/T)atagc intron-variant

Relevant External Links for MKLN1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKLN1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MKLN1-AS Gene

Disorders for MKLN1-AS Gene

Relevant External Links for MKLN1-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MKLN1-AS

No disorders were found for MKLN1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKLN1-AS Gene

Publications for MKLN1-AS Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MKLN1-AS Gene

Sources for MKLN1-AS Gene

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