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Aliases for MKLN1-AS Gene

Subcategory (RNA class) for MKLN1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for MKLN1-AS Gene

  • MKLN1 Antisense RNA 2 3 5
  • MKLN1 Antisense RNA 2 2 3
  • MKLN1-AS2 3

External Ids for MKLN1-AS Gene

Previous HGNC Symbols for MKLN1-AS Gene

  • MKLN1-AS2

Previous GeneCards Identifiers for MKLN1-AS Gene

  • GC07M131001

Summaries for MKLN1-AS Gene

GeneCards Summary for MKLN1-AS Gene

MKLN1-AS (MKLN1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MKLN1-AS Gene

Genomics for MKLN1-AS Gene

Regulatory Elements for MKLN1-AS Gene

Enhancers for MKLN1-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G131104 1.8 FANTOM5 ENCODE dbSUPER 10.7 +219.8 219820 8.6 CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D SSRP1 MKLN1-AS ENSG00000270953 MKLN1 RNU6-1010P GC07M131055
GH07G131511 1.5 Ensembl ENCODE dbSUPER 10.7 -184.9 -184875 2.9 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 ZNF48 ZNF143 DEK YY2 MKLN1-AS RPL31P36 ENSG00000273489
GH07G131248 1.3 Ensembl ENCODE dbSUPER 11.1 +78.8 78839 1.8 GTF2F1 MXI1 ZBTB21 JUN MAX SIN3A RAD21 ZKSCAN1 HIC1 POLR2A MKLN1-AS MKLN1 LINC-PINT COPG2 RPL27P11 GC07M131248
GH07G131218 1.3 Ensembl ENCODE 10.5 +108.8 108776 1.7 FOXA2 PKNOX1 SIN3A YY1 SLC30A9 FOS ZNF548 SP3 SP5 TBX21 LINC-PINT MKLN1 MKLN1-AS GC07M131204 RPL27P11
GH07G131243 1.2 Ensembl ENCODE dbSUPER 10.9 +83.7 83736 1.1 ATF1 HDAC6 JUN RAD21 FOSL1 ZNF366 KDM5B FOS CREM TCF7L2 MKLN1 LINC-PINT MKLN1-AS RPL27P11 GC07M131248
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MKLN1-AS on UCSC Golden Path with GeneCards custom track

Promoters for MKLN1-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000218128 122 2201 CREB3L1 AGO1 DMAP1 YY1 ZNF416 ZNF548 ZNF263 SP3 MEF2D ZNF610

Genomic Location for MKLN1-AS Gene

Chromosome:
7
Start:
131,309,744 bp from pter
End:
131,328,222 bp from pter
Size:
18,479 bases
Orientation:
Minus strand

Genomic View for MKLN1-AS Gene

Genes around MKLN1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MKLN1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MKLN1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MKLN1-AS Gene

Proteins for MKLN1-AS Gene

Post-translational modifications for MKLN1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for MKLN1-AS Gene

Domains & Families for MKLN1-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MKLN1-AS Gene

Function for MKLN1-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MKLN1-AS Gene

Localization for MKLN1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MKLN1-AS Gene

Pathways & Interactions for MKLN1-AS Gene

SuperPathways for MKLN1-AS Gene

No Data Available

Interacting Proteins for MKLN1-AS Gene

Gene Ontology (GO) - Biological Process for MKLN1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MKLN1-AS Gene

Drugs & Compounds for MKLN1-AS Gene

No Compound Related Data Available

Transcripts for MKLN1-AS Gene

mRNA/cDNA for MKLN1-AS Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MKLN1-AS Gene

No ASD Table

Relevant External Links for MKLN1-AS Gene

GeneLoc Exon Structure for
MKLN1-AS
ECgene alternative splicing isoforms for
MKLN1-AS

Expression for MKLN1-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MKLN1-AS Gene

genes like me logo Genes that share expression patterns with MKLN1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MKLN1-AS Gene

Orthologs for MKLN1-AS Gene

Evolution for MKLN1-AS Gene

ENSEMBL:
Gene Tree for MKLN1-AS (if available)
TreeFam:
Gene Tree for MKLN1-AS (if available)

No data available for Orthologs for MKLN1-AS Gene

Paralogs for MKLN1-AS Gene

No data available for Paralogs for MKLN1-AS Gene

Variants for MKLN1-AS Gene

Sequence variations from dbSNP and Humsavar for MKLN1-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000003618 -- 131,311,574(+) GAGGT(G/T)CCTTT intron-variant
rs1000034967 -- 131,311,873(+) GTTTC(C/T)TAAAA intron-variant
rs1000076557 -- 131,328,678(+) AGATG(A/G)GTTTG intron-variant, upstream-variant-2KB
rs1000292247 -- 131,320,824(+) ATATG(A/T)AAAAT intron-variant
rs1000466722 -- 131,327,361(+) TTCCT(C/T)TTCCT intron-variant, upstream-variant-2KB

Relevant External Links for MKLN1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MKLN1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MKLN1-AS Gene

Disorders for MKLN1-AS Gene

Relevant External Links for MKLN1-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MKLN1-AS

No disorders were found for MKLN1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MKLN1-AS Gene

Publications for MKLN1-AS Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for MKLN1-AS Gene

Sources for MKLN1-AS Gene

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