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Aliases for MIXL1 Gene

Aliases for MIXL1 Gene

  • Mix Paired-Like Homeobox 2 3
  • MIXL 3 4 6
  • MIX1 Homeobox-Like Protein 1 3 4
  • Mix.1 Homeobox-Like Protein 3 4
  • Homeodomain Protein MIX 3 4
  • MIX 3 6
  • Mix1 Homeobox (Xenopus Laevis)-Like 1 2
  • Mix1 Homeobox-Like 1 (Xenopus Laevis) 2
  • Mix-Like Homeobox Protein 1 3
  • Homeobox Protein MIXL1 3
  • MILD1 3
  • HMix 4

External Ids for MIXL1 Gene

Summaries for MIXL1 Gene

Entrez Gene Summary for MIXL1 Gene

  • Homeodomain proteins, such as MIXL1, are transcription factors that regulate cell fate during development (Hart et al., 2005 [PubMed 15982639]).[supplied by OMIM, Mar 2008]

GeneCards Summary for MIXL1 Gene

MIXL1 (Mix Paired-Like Homeobox) is a Protein Coding gene. Diseases associated with MIXL1 include uterine inversion. Among its related pathways are Cardiac Progenitor Differentiation and Adipogenesis. GO annotations related to this gene include protein homodimerization activity and RNA polymerase II core promoter proximal region sequence-specific DNA binding. An important paralog of this gene is PITX3.

UniProtKB/Swiss-Prot for MIXL1 Gene

  • Transcription factor that play a central role in proper axial mesendoderm morphogenesis and endoderm formation. Required for efficient differentiation of cells from the primitive streak stage to blood, by acting early in the recruitment and/or expansion of mesodermal progenitors to the hemangioblastic and hematopoietic lineages. Also involved in the morphogenesis of the heart and the gut during embryogenesis. Acts as a negative regulator of brachyury expression (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIXL1 Gene

Genomics for MIXL1 Gene

Genomic Location for MIXL1 Gene

Start:
226,223,618 bp from pter
End:
226,227,055 bp from pter
Size:
3,438 bases
Orientation:
Plus strand

Genomic View for MIXL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIXL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIXL1 Gene

Proteins for MIXL1 Gene

  • Protein details for MIXL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2W2-MIXL1_HUMAN
    Recommended name:
    Homeobox protein MIXL1
    Protein Accession:
    Q9H2W2
    Secondary Accessions:
    • B7ZLF9

    Protein attributes for MIXL1 Gene

    Size:
    232 amino acids
    Molecular mass:
    24659 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MIXL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MIXL1 Gene

Proteomics data for MIXL1 Gene at MOPED

Post-translational modifications for MIXL1 Gene

Other Protein References for MIXL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for MIXL1 Gene

Domains for MIXL1 Gene

Gene Families for MIXL1 Gene

HGNC:
  • PRD :Homeoboxes / PRD class

Protein Domains for MIXL1 Gene

UniProtKB/Swiss-Prot:

MIXL1_HUMAN
Domain:
  • Contains 1 homeobox DNA-binding domain.:
    • Q9H2W2
Family:
  • Belongs to the paired homeobox family.:
    • Q9H2W2
genes like me logo Genes that share domains with MIXL1: view

Function for MIXL1 Gene

Molecular function for MIXL1 Gene

UniProtKB/Swiss-Prot Function: Transcription factor that play a central role in proper axial mesendoderm morphogenesis and endoderm formation. Required for efficient differentiation of cells from the primitive streak stage to blood, by acting early in the recruitment and/or expansion of mesodermal progenitors to the hemangioblastic and hematopoietic lineages. Also involved in the morphogenesis of the heart and the gut during embryogenesis. Acts as a negative regulator of brachyury expression (By similarity).

Gene Ontology (GO) - Molecular Function for MIXL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding ISS --
GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding ISS --
GO:0000987 core promoter proximal region sequence-specific DNA binding ISS --
GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription ISS --
GO:0001085 RNA polymerase II transcription factor binding ISS 22164283
genes like me logo Genes that share ontologies with MIXL1: view
genes like me logo Genes that share phenotypes with MIXL1: view

miRNA for MIXL1 Gene

miRTarBase miRNAs that target MIXL1

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for MIXL1 Gene

Localization for MIXL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MIXL1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MIXL1 Gene COMPARTMENTS Subcellular localization image for MIXL1 gene
Compartment Confidence
nucleus 5
extracellular 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for MIXL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin ISS --
GO:0005634 nucleus --
genes like me logo Genes that share ontologies with MIXL1: view

Pathways for MIXL1 Gene

genes like me logo Genes that share pathways with MIXL1: view

Pathways by source for MIXL1 Gene

2 BioSystems pathways for MIXL1 Gene

Gene Ontology (GO) - Biological Process for MIXL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001706 endoderm formation --
GO:0002244 hematopoietic progenitor cell differentiation ISS --
GO:0006351 transcription, DNA-templated IEA --
GO:0007369 gastrulation ISS --
GO:0007492 endoderm development ISS --
genes like me logo Genes that share ontologies with MIXL1: view

Transcripts for MIXL1 Gene

mRNA/cDNA for MIXL1 Gene

(3) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIXL1 Gene

Mix paired-like homeobox:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIXL1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b
SP1:
SP2:

Relevant External Links for MIXL1 Gene

GeneLoc Exon Structure for
MIXL1
ECgene alternative splicing isoforms for
MIXL1

Expression for MIXL1 Gene

mRNA expression in normal human tissues for MIXL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MIXL1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (6.4), Spleen (5.9), and Brain - Cerebellum (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MIXL1 Gene

SOURCE GeneReport for Unigene cluster for MIXL1 Gene Hs.282079

mRNA Expression by UniProt/SwissProt for MIXL1 Gene

Q9H2W2-MIXL1_HUMAN
Tissue specificity: Restricted to progenitors and secondary lymph tissues. In normal hematopoiesis, it is restricted to immature B- and T-lymphoid cells. Present in differentiating embryonic stem cells (at protein level).
genes like me logo Genes that share expressions with MIXL1: view

Orthologs for MIXL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for MIXL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MIXL1 36
  • 86.28 (n)
  • 83.19 (a)
MIXL1 37
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia MIXL1 36
  • 85.71 (n)
  • 80.09 (a)
MIXL1 37
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MIXL1 37
  • 25 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mixl1 36
  • 74.64 (n)
  • 70 (a)
Mixl1 16
Mixl1 37
  • 69 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MIXL1 37
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia MIXL1 37
  • 51 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia MIXL1 37
  • 29 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii bon 37
  • 19 (a)
OneToMany
bon 37
  • 19 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta repo 37
  • 8 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea ceh-54 37
  • 20 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 15 (a)
OneToMany
-- 37
  • 18 (a)
OneToMany
Species with no ortholog for MIXL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for MIXL1 Gene

ENSEMBL:
Gene Tree for MIXL1 (if available)
TreeFam:
Gene Tree for MIXL1 (if available)

Paralogs for MIXL1 Gene

Paralogs for MIXL1 Gene

Selected SIMAP similar genes for MIXL1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with MIXL1: view

Variants for MIXL1 Gene

Sequence variations from dbSNP and Humsavar for MIXL1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1219655 -- 226,222,050(-) CATCC(A/G)TTGGC upstream-variant-2KB
rs1219656 -- 226,221,903(-) AGCCG(A/G)GCATG upstream-variant-2KB
rs2615799 -- 226,224,529(-) AACGT(A/G)ACACT intron-variant
rs3738796 -- 226,225,662(-) GGCAG(A/G)CAGTT reference, synonymous-codon
rs3931337 -- 226,225,138(+) CAAAA(A/T)ACCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIXL1 Gene

Variant ID Type Subtype PubMed ID
nsv832759 CNV Loss 17160897
nsv517107 CNV Gain+Loss 19592680
nsv873233 CNV Loss 21882294

Relevant External Links for MIXL1 Gene

HapMap Linkage Disequilibrium report
MIXL1

Disorders for MIXL1 Gene

(1) MalaCards Diseases for MIXL1 Gene

Search for MIXL1 Gene in MalaCards »

(3) University of Copenhagen DISEASES for MIXL1 Gene

genes like me logo Genes that share disorders with MIXL1: view

No data available for UniProtKB/Swiss-Prot for MIXL1 Gene

Publications for MIXL1 Gene

  1. A human Mix-like homeobox gene MIXL shows functional similarity to Xenopus Mix.1. (PMID: 12070013) Guo W. … Nagarajan L. (Blood 2002) 2 3 4
  2. Structure, upstream promoter region, and functional domains of a mouse and human Mix paired-like homeobox gene. (PMID: 12095687) Sahr K. … Baron M.H. (Gene 2002) 2 3
  3. Differential expression of the human MIXL1 gene product in non- Hodgkin and Hodgkin lymphomas. (PMID: 17303500) Drakos E. … Nagarajan L. (Hum. Pathol. 2007) 3 4
  4. Targeting a GFP reporter gene to the MIXL1 locus of human embryonic stem cells identifies human primitive streak-like cells and enables isolation of primitive hematopoietic precursors. (PMID: 18032708) Davis R.P. … Stanley E.G. (Blood 2008) 3
  5. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 3

Products for MIXL1 Gene

Sources for MIXL1 Gene

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