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MIRLET7A1 Gene

RNA gene   GIFtS: 25
GCID: GC09P096938

MicroRNA Let-7a-1


(Previous symbol: MIRNLET7A1)
Pneumococci & Pneumococcal Diseases Congress
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Subcategory (RNA class): undefined

Quality score for this RNA gene is 3

Aliases
MicroRNA Let-7a-11 2
MIRNLET7A11 2 5
let-7a-12 9
LET7A12 5

External Ids:    HGNC: 314761   Entrez Gene: 4068812   Ensembl: ENSG000001991657   OMIM: 6053865   
ORGUL members:    fRNAdb10:FR202466      

Export aliases for MIRLET7A1 gene to outside databases

Previous GC identifer: GC09P095981


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for MIRLET7A1 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIRLET7A1 Gene:
MIRLET7A1 (microRNA let-7a-1) is an RNA gene, and is affiliated with the undefined RNA class. Diseases associated with MIRLET7A1 include endometrial adenocarcinoma, and diffuse large b-cell lymphoma.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for MIRLET7A1
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat MIRLET7A1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q22.32   Ensembl cytogenetic band:  9q22.32   HGNC cytogenetic band: 9q22.32

MIRLET7A1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIRLET7A1 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P096938:  view genomic region (via miRBase)     (about GC identifiers)

Start:
96,938,234 bp from pter      End:
96,938,325 bp from pter
Size:
92 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for MIRLET7A1 About    
See pathways by source

SuperPathContained pathways About
1miRNAs involved in DDR
miRNAs involved in DDR
2MicroRNAs in cancer
MicroRNAs in cancer

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


1 BioSystems Pathway for MIRLET7A1
    miRNAs involved in DDR


1 Kegg Pathway  (Kegg details for MIRLET7A1):
    MicroRNAs in cancer


MIRLET7A1 for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for MIRLET7A1
Interactions:

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for MIRLET7A1



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000362295(miRNA)

miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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Expression evidence for MIRLET7A1:none

See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

MIRLET7A1 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for MIRLET7A1 gene from Selected species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-let-7k6
gga-let-7k
75(a)
many ↔ many
26(1592118-1592200) ENSGALG00000018308
lizard
(Anolis carolinensis)
Reptilia aca-let-7a6
--
(see all 3)
--
91(a)
76(a)
(see all 3)
many ↔ many
many ↔ many
(see all 3)
GL343225.1(748895-748984)
5(83533330-83533421)
zebrafish
(Danio rerio)
Actinopterygii dre-let-7a-36
CR354430.26
(see all 3)
--
67(a)
67(a)
(see all 3)
many ↔ many
many ↔ many
(see all 3)
4(17722339-17722445)
25(2130557-2130660)
        Species with no ortholog for MIRLET7A1

ENSEMBL Gene Tree for MIRLET7A1 (if available)
TreeFam Gene Tree for MIRLET7A1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for MIRLET7A1 (see all 11)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 9 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1485278291,2
--96936244(+) ACCAAC/TAGAGT 1 -- us2k10--------
rs1824078851,2
--96936287(+) TGAAGG/TTAGTA 1 -- us2k10--------
rs1852535981,2
--96936320(+) CAAACA/GCGTAA 1 -- us2k10--------
rs1421837611,2
--96936321(+) AAACAC/TGTAAG 1 -- us2k10--------
rs1140510051,2
F--96936395(+) GGTTTC/TACAAC 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1478208811,2
--96936457(+) ACACTC/TATTAT 1 -- us2k10--------
rs1146507471,2
C,F--96936465(+) TATCAC/GTGGTT 1 -- us2k11Minor allele frequency- G:0.03WA 118
rs1398126911,2
--96936615(+) CAGAGC/TTGTCC 1 -- us2k10--------
rs78654711,2
C,F,H--96936622(+) gtccaA/Caccct 1 -- us2k15Minor allele frequency- C:0.01NS EA WA 536
rs3743456111,2
----96936283(+) TACCTA/GAGTTA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for MIRLET7A1 (96938234 - 96938325 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for MIRLET7A1:    About this table    
Variant IDTypeSubtypePubMed ID
nsv831655CNV Gain17160897

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing MIRLET7A1
DNA2.0 Custom Variant and Variant Library Synthesis for MIRLET7A1

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 605386    OMIM disorders: --

Selected diseases for MIRLET7A1 (see all 36):    
About MalaCards
endometrial adenocarcinoma    diffuse large b-cell lymphoma    lipoma    leiomyosarcoma
cholesteatoma    b-cell lymphomas    liposarcoma    leiomyoma
pituitary adenoma    periodontitis    cervical cancer    laryngitis
adenoma    myelodysplastic syndromes    cervicitis    pancreatic cancer
lung cancer    esophageal squamous cell carcinoma    ovarian cancer    nasopharyngitis


MIRLET7A1 for disorders           About GeneDecksing


Congresses - knowledge worth sharing:
The International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD) 9 - 13 March 2014
Genetic Association Database (GAD): MIRLET7A1
Human Genome Epidemiology (HuGE) Navigator: MIRLET7A1 (1 document)

Export disorders for MIRLET7A1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for MIRLET7A1 gene, integrated from 10 sources (see all 76):
(articles sorted by number of sources associating them with MIRLET7A1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Novel genetic variants in miR-191 gene and familial ovarian cancer. (PubMed id 20167074)1, 4 Shen J....Zhao H. (BMC Cancer 2010)
  2. SOX2-LIN28/let-7 pathway regulates proliferation and neurogenesis in neural precursors. (PubMed id 23884650)1 Cimadamore F....Terskikh A.V. (Proc. Natl. Acad. Sci. U.S.A. 2013)
  3. Let7a inhibits the growth of endometrial carcinoma cells by targeting Aurora-B. (PubMed id 23769985)1 Liu P....Liu Y. (FEBS Lett. 2013)
  4. MicroRNA let-7a inhibits the proliferation and invasion of nonsmall cell lung cancer cell line 95D by regulating K-Ras and HMGA2 gene expression. (PubMed id 23134218)1 Wang Y.Y....He X.Y. (amp 2013)
  5. Expression analysis of mir-17-5p, mir-20a and let-7a microRNAs and their target proteins in CD34+ bone marrow cells of patients with myelodysplastic syndromes. (PubMed id 23246221)1 Vasilatou D....Pappa V. (Leuk. Res. 2013)
  6. The regulatory mechanism of CCR7 gene expression and its involvement in the metastasis and progression of gastric cancer. (PubMed id 23519840)1 Wang W.N....Hu T.H. (Tumour Biol. 2013)
  7. Autocrine role of interleukin-13 on skeletal muscle glucose metabolism in type 2 diabetic patients involves microRNA let-7. (PubMed id 24105413)1 Jiang L.Q....Krook A. (Am. J. Physiol. Endocrinol. Metab. 2013)
  8. LIN28 Expression in malignant germ cell tumors downregulates let-7 and increases oncogene levels. (PubMed id 23774216)1 Murray M.J....Coleman N. (Cancer Res. 2013)
  9. The heterochronic microRNA let-7 inhibits cell motility by regulating the genes in the actin cytoskeleton pathway in breast cancer. (PubMed id 23339187)1 Hu X....Zhang L. (Mol. Cancer Res. 2013)
  10. Estrogen receptor-regulated microRNAs contribute to the BCL2/BAX imbalance in endometrial adenocarcinoma and precancerous lesions. (PubMed id 22014978)1 Zhang R....Wei Z. (Cancer Lett. 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 406881 HGNC: 31476 Ensembl:ENSG00000199165 miRBase: hsa-let-7a-1 euGenes: HUgn406881
ECgene: MIRLET7A1 Kegg: 406881 H-InvDB: MIRLET7A1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for MIRLET7A1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for MIRLET7A1 gene:
Search GeneIP for patents involving MIRLET7A1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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