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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MIRLET7A1 Gene

RNA gene   GIFtS: 26
GCID: GC09P096938

MicroRNA Let-7a-1


(Previous symbol: MIRNLET7A1)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): undefined

Quality score for this RNA gene is 3

Aliases
MicroRNA Let-7a-11 2
MIRNLET7A11 2 5
let-7a-12 9
LET7A12 5

External Ids:    HGNC: 314761   Entrez Gene: 4068812   Ensembl: ENSG000001991657   OMIM: 6053865   
ORGUL members:    fRNAdb10:FR202466      

Export aliases for MIRLET7A1 gene to outside databases

Previous GC identifer: GC09P095981


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for MIRLET7A1 Gene:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of
gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are
transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can
be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme
to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the
cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The
mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through
imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of
the target mRNA. The RefSeq represents the predicted microRNA stem-loop. (provided by RefSeq, Sep 2009)

GeneCards Summary for MIRLET7A1 Gene: 
MIRLET7A1 (microRNA let-7a-1) is an RNA gene, and is affiliated with the undefined RNA class. Diseases associated with MIRLET7A1 include endometrial adenocarcinoma, and diffuse large b-cell lymphoma.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for MIRLET7A1
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIRLET7A1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q22.32   Ensembl cytogenetic band:  9q22.32   HGNC cytogenetic band: 9q22.32

MIRLET7A1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIRLET7A1 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P096938:  view genomic region (via miRBase)     (about GC identifiers)

Start:
96,938,234 bp from pter      End:
96,938,325 bp from pter
Size:
92 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
MIR: ncRNAs / Micro RNAs

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for MIRLET7A1 About                                                                                                See pathways by source

SuperPathContained pathways About
1MicroRNAs in cancer
MicroRNAs in cancer
2miRNAs involved in DDR
miRNAs involved in DDR

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


1 BioSystems Pathway for MIRLET7A1
    miRNAs involved in DDR


1         Kegg Pathway  (Kegg details for MIRLET7A1):
    MicroRNAs in cancer


MIRLET7A1 for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MIRLET7A1

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MIRLET7A1

Search CenterWatch for drugs/clinical trials and news about MIRLET7A1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000362295(miRNA)
miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for MIRLET7A1:none

MIRLET7A1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
MIRLET7A1 Expression
About this image

    SABiosciences Custom PCR Arrays for MIRLET7A1
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for MIRLET7A1 gene from 3/10 species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves gga-let-7a-36
gga-let-7k6
gga-let-7k
88(a)
75(a)
possible ortholog
possible ortholog
1(71371150-71371225) ENSGALG00000018240
26(1592118-1592200) ENSGALG00000018308
lizard
(Anolis carolinensis)
Reptilia --
aca-let-7e6
aca-let-7e
75(a)
67(a)
possible ortholog
possible ortholog
5(83533330-83533421)
4(123683603-123683694)
zebrafish
(Danio rerio)
Actinopterygii mirlet7a-16
CR847944.56
(see all 5)
--
88(a)
76(a)
(see all 5)
possible ortholog
possible ortholog
(see all 5)
11(28380072-28380160) ENSDARG00000083258
6(54462257-54462336) ENSDARG00000082908
        Species with no ortholog for MIRLET7A1

ENSEMBL Gene Tree for MIRLET7A1 (if available)
TreeFam Gene Tree for MIRLET7A1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/11 SNPs in MIRLET7A1 are shown (see all 11)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 9 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1485278291,2
--96936244(+) ACCAAC/TAGAGT 1 -- us2k10--------
rs1824078851,2
--96936287(+) TGAAGG/TTAGTA 1 -- us2k10--------
rs1852535981,2
--96936320(+) CAAACA/GCGTAA 1 -- us2k10--------
rs1421837611,2
--96936321(+) AAACAC/TGTAAG 1 -- us2k10--------
rs1140510051,2
F--96936395(+) GGTTTC/TACAAC 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1478208811,2
--96936457(+) ACACTC/TATTAT 1 -- us2k10--------
rs1146507471,2
C,F--96936465(+) TATCAC/GTGGTT 1 -- us2k11Minor allele frequency- G:0.03WA 118
rs1398126911,2
--96936615(+) CAGAGC/TTGTCC 1 -- us2k10--------
rs78654711,2
C,F,H--96936622(+) gtccaA/Caccct 1 -- us2k15Minor allele frequency- C:0.01NS EA WA 536
rs3743456111,2
----96936283(+) TACCTA/GAGTTA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for MIRLET7A1 (96938234 - 96938325 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for MIRLET7A1:    About this table     
Variant IDTypeSubtypePubMed ID
nsv831655CNV Gain17160897

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 605386    OMIM disorders: --

20/32 diseases for MIRLET7A1 (see all 32):    About MalaCards
endometrial adenocarcinoma    diffuse large b-cell lymphoma    juvenile myelomonocytic leukemia    lipoma
leiomyosarcoma    b-cell lymphomas    liposarcoma    leiomyoma
cholesteatoma    laryngitis    pituitary adenoma    cervicitis
periodontitis    cervical cancer    adenoma    pancreatic cancer
colon cancer    gastric cancer    hepatocellular carcinoma    colorectal cancer


MIRLET7A1 for disorders           About GeneDecksing

Genetic Association Database (GAD): MIRLET7A1
Human Genome Epidemiology (HuGE) Navigator: MIRLET7A1 (1 document)

Export disorders for MIRLET7A1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for MIRLET7A1 gene, integrated from 9 sources (see all 72):
(articles sorted by number of sources associating them with MIRLET7A1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Novel genetic variants in miR-191 gene and familial o varian cancer. (PubMed id 20167074)1, 4 Shen J....Zhao H. (2010)
  2. MicroRNA let-7a inhibits the proliferation and invasio n of nonsmall cell lung cancer cell line 95D by regulating K-Ras and HMGA2 gene expression. (PubMed id 23134218)1 Wang Y.Y....He X.Y. (2013)
  3. Expression analysis of mir-17-5p, mir-20a and let-7a m icroRNAs and their target proteins in CD34+ bone marrow cells of patients with m yelodysplastic syndromes. (PubMed id 23246221)1 Vasilatou D....Pappa V. (2013)
  4. The regulatory mechanism of CCR7 gene expression and i ts involvement in the metastasis and progression of gastric cancer. (PubMed id 23519840)1 Wang W.N....Hu T.H. (2013)
  5. The heterochronic microRNA let-7 inhibits cell motilit y by regulating the genes in the actin cytoskeleton pathway in breast cancer. (PubMed id 23339187)1 Hu X....Zhang L. (2013)
  6. Estrogen receptor-regulated microRNAs contribute to t he BCL2/BAX imbalance in endometrial adenocarcinoma and precancerous lesions. (PubMed id 22014978)1 Zhang R....Wei Z. (2012)
  7. Investigation and identification of let-7a related fun ctional proteins in gastric carcinoma by proteomics. (PubMed id 22596182)1 Zhu Y....Liu Z. (2012)
  8. High let-7a microRNA levels in KRAS-mutated colorectal carcinomas may rescue anti-EGFR therapy effects in patients with chemotherapy-r efractory metastatic disease. (PubMed id 22584434)1 Ruzzo A....Magnani M. (2012)
  9. Senescence is an endogenous trigger for microRNA-direc ted transcriptional gene silencing in human cells. (PubMed id 22366686)1 Benhamed M....Bischof O. (2012)
  10. Let-7a inhibits proliferation and induces apoptosis by targeting EZH2 in nasopharyngeal carcinoma cells. (PubMed id 22972404)1 Cai K....Wang Z. (2012)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 406881 HGNC: 31476 Ensembl:ENSG00000199165 miRBase: hsa-let-7a-1 euGenes: HUgn406881
ECgene: MIRLET7A1 Kegg: 406881 H-InvDB: MIRLET7A1

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for MIRLET7A1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for MIRLET7A1 gene:
Search GeneIP for patents involving MIRLET7A1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
GIFtS Group
The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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