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Aliases for MIR99AHG Gene

Subcategory (RNA class) for MIR99AHG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR99AHG Gene

  • Mir-99a-Let-7c Cluster Host Gene 2 3 5
  • Mir-99a-Let-7c Cluster Host Gene (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 478 2 3
  • Megakaryocytic Oncogenic Non-Coding RNA 2 3
  • Chromosome 21 Open Reading Frame 35 2
  • Chromosome 21 Open Reading Frame 34 2
  • LINC00478 3
  • C21orf34 3
  • C21orf35 3
  • MONC 3

External Ids for MIR99AHG Gene

Previous HGNC Symbols for MIR99AHG Gene

  • C21orf35
  • FLJ38295
  • C21orf34
  • LINC00478

Previous GeneCards Identifiers for MIR99AHG Gene

  • GC21P016070

Summaries for MIR99AHG Gene

GeneCards Summary for MIR99AHG Gene

MIR99AHG (Mir-99a-Let-7c Cluster Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR99AHG Gene

Genomics for MIR99AHG Gene

Regulatory Elements for MIR99AHG Gene

Enhancers for MIR99AHG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G016307 1.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 4.9 +380.6 380571 3.3 ZSCAN26 CEBPB JUNB EP300 ATF2 RFX5 ATF3 CREM PRDM1 ENSG00000201025 MIR99AHG ENSG00000270071 GC21P016344
GH21G015986 0.8 ENCODE 0.2 +58.1 58120 0.2 HDGF LEF1 PKNOX1 JUN FEZF1 HIC1 CTBP1 GATA2 TCF7L2 SCRT1 RNU6-426P MIR99AHG
GH21G015992 0.5 ENCODE 0.2 +64.0 64040 0.2 GATA2 JUN FOS MAFK RNU6-426P MIR99AHG
GH21G016004 0.5 ENCODE 0.2 +74.8 74790 0.1 CTCF ZNF654 GATA3 SMC3 RAD21 RNU6-426P MIR99AHG
GH21G015903 0.3 FANTOM5 0.3 -24.6 -24571 0.0 GC21P015884 MIR99AHG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR99AHG on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR99AHG Gene

Chromosome:
21
Start:
15,928,296 bp from pter
End:
16,627,397 bp from pter
Size:
699,102 bases
Orientation:
Plus strand

Genomic View for MIR99AHG Gene

Genes around MIR99AHG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR99AHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR99AHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR99AHG Gene

Proteins for MIR99AHG Gene

Post-translational modifications for MIR99AHG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR99AHG Gene

Domains & Families for MIR99AHG Gene

Gene Families for MIR99AHG Gene

Suggested Antigen Peptide Sequences for MIR99AHG Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR99AHG: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR99AHG Gene

Function for MIR99AHG Gene

genes like me logo Genes that share phenotypes with MIR99AHG: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR99AHG Gene

Localization for MIR99AHG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR99AHG Gene

Pathways & Interactions for MIR99AHG Gene

SuperPathways for MIR99AHG Gene

No Data Available

Interacting Proteins for MIR99AHG Gene

Gene Ontology (GO) - Biological Process for MIR99AHG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR99AHG Gene

Transcripts for MIR99AHG Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR99AHG Gene

No ASD Table

Relevant External Links for MIR99AHG Gene

GeneLoc Exon Structure for
MIR99AHG
ECgene alternative splicing isoforms for
MIR99AHG

Expression for MIR99AHG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR99AHG Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR99AHG Gene:

MIR99AHG
genes like me logo Genes that share expression patterns with MIR99AHG: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR99AHG Gene

Orthologs for MIR99AHG Gene

Evolution for MIR99AHG Gene

ENSEMBL:
Gene Tree for MIR99AHG (if available)
TreeFam:
Gene Tree for MIR99AHG (if available)

No data available for Orthologs for MIR99AHG Gene

Paralogs for MIR99AHG Gene

No data available for Paralogs for MIR99AHG Gene

Variants for MIR99AHG Gene

Sequence variations from dbSNP and Humsavar for MIR99AHG Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000005013 -- 16,381,653(+) TTATC(A/C)AAATG intron-variant
rs1000006542 -- 16,330,906(+) TTATT(A/T)AGTCT intron-variant
rs1000007110 -- 16,574,908(+) GTGTG(-/TC)TCTCT intron-variant
rs1000016915 -- 16,350,598(+) CTCAC(A/G)TGCCA intron-variant
rs1000018408 -- 16,504,149(+) CACTT(C/T)TATGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR99AHG Gene

Variant ID Type Subtype PubMed ID
dgv703e201 CNV deletion 23290073
esv1007658 CNV insertion 20482838
esv1459678 CNV insertion 17803354
esv1481086 CNV insertion 17803354
esv1991937 CNV deletion 18987734
esv2219573 CNV deletion 18987734
esv2525221 CNV deletion 19546169
esv2662987 CNV deletion 23128226
esv2665052 CNV deletion 23128226
esv2668987 CNV deletion 23128226
esv2670010 CNV deletion 23128226
esv26847 CNV loss 19812545
esv2723190 CNV deletion 23290073
esv2723192 CNV deletion 23290073
esv32643 CNV gain 17666407
esv3310480 CNV novel sequence insertion 20981092
esv3310523 CNV novel sequence insertion 20981092
esv3337183 CNV insertion 20981092
esv3369644 CNV insertion 20981092
esv3383436 CNV insertion 20981092
esv3646454 CNV loss 21293372
esv3646455 CNV loss 21293372
esv3646456 CNV loss 21293372
esv3646457 CNV loss 21293372
esv3646458 CNV loss 21293372
esv3646460 CNV loss 21293372
esv3893374 CNV loss 25118596
esv9313 CNV gain 19470904
esv988032 CNV insertion 20482838
nsv1073114 CNV deletion 25765185
nsv1114266 CNV deletion 24896259
nsv1119493 CNV insertion 24896259
nsv1123534 CNV deletion 24896259
nsv1135905 CNV deletion 24896259
nsv187426 CNV insertion 16902084
nsv459101 CNV loss 19166990
nsv470880 CNV loss 18288195
nsv472294 CNV novel sequence insertion 20440878
nsv477704 CNV novel sequence insertion 20440878
nsv478819 CNV novel sequence insertion 20440878
nsv510494 OTHER sequence alteration 20534489
nsv521068 CNV loss 19592680
nsv527854 CNV loss 19592680
nsv527885 CNV loss 19592680
nsv587077 CNV loss 21841781
nsv587078 CNV loss 21841781
nsv817915 CNV loss 17921354
nsv828825 CNV loss 20364138
nsv834051 CNV gain 17160897
nsv834052 CNV gain+loss 17160897
nsv953344 CNV duplication 24416366
nsv956739 CNV deletion 24416366

Relevant External Links for MIR99AHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR99AHG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR99AHG Gene

Disorders for MIR99AHG Gene

Relevant External Links for MIR99AHG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR99AHG

No disorders were found for MIR99AHG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR99AHG Gene

Publications for MIR99AHG Gene

  1. LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia. (PMID: 25027842) Emmrich S. … Klusmann J.H. (Mol. Cancer 2014) 2 3 64
  2. Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis. (PMID: 12036298) Gardiner K. … Davisson M. (Genomics 2002) 2 3 64
  3. A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity. (PMID: 24785509) Barnett G.C. … West C.M. (Radiother Oncol 2014) 3 64
  4. Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease. (PMID: 23144326) Kim D.K. … Silverman E.K. (Am. J. Respir. Crit. Care Med. 2012) 3 64
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64

Products for MIR99AHG Gene

Sources for MIR99AHG Gene

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