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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

MIR96 Gene

RNA gene   GIFtS: 23
GCID: GC07M129414

microRNA 96

(Previous names: deafness, autosomal dominant 50 )
(Previous symbols: MIRN96, DFNA50)
 Explore 8 diseases affiliated with
MIR96 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for MIR96    

Aliases
for MIR96 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Subcategory (RNA class): miRNA

Quality score for this RNA gene is 13

Aliases
MicroRNA 961 2     Deafness, Autosomal Dominant 501
DFNA501 2 5     MiR-961
MIRN961 2 5     MiRNA961
Hsa-Mir-961     Mir-961

External Ids:    HGNC: 316481   Entrez Gene: 4070532   Ensembl: ENSG000001991587   OMIM: 6116065   
ORGUL members:         
miRBase: MI0000098    

Export aliases for MIR96 gene to outside databases

Previous GC identifer: GC07M129203


Summaries
for MIR96 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for MIR96:
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene
expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed
by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either
protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an
approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer
ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated
into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the
miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq
represents the predicted microRNA stem-loop. The microRNA encoded by this gene has been shown to down-regulate
production of FOXO1, FOXO3, and microphthalmia-associated transcription factor-M, resulting in metastasis of certain
tumors. Also, point mutations in the seed region of this microRNA are a cause of autosomal dominant, progressive
hearing loss. (provided by RefSeq, Mar 2010)




Genomic Views
for MIR96 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
 Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for MIR96
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat MIR96


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q32.2   Ensembl cytogenetic band:  7q32.2   HGNC cytogenetic band: 7q32.2

MIR96 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
MIR96 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M129414:  view genomic region (via miRBase)     (about GC identifiers)

Start:
 129,414,532 bp from pter      End:
 129,414,609 bp from pter
Size:
 78 bases      Orientation:
 minus strand

1 alternative location:
Chr7-,CRA_TCAG 128,798,808-128,798,885     

Proteins
for MIR96 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB: --

Protein Domains /
Families
for MIR96 gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
   --

Function
for MIR96 gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
miRNA
Products:    		miRTarBase genes targeted by MIR96:
PRMT5(MIRT004352), KRAS(MIRT005553), CDKN1A(MIRT003414), FOXO1(MIRT001087), FOXO3(MIRT005450)

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In Situ Assay
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Animal Models:
     4 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Mir96):
 behavior/neurological  growth/size  hearing/vestibular/ear  nervous system 

MIR96 for phenotypes           About GeneDecksing


Pathways & Interactions
for MIR96 gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for MIR96

Drugs & Compounds
for MIR96 gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for MIR96
Search CenterWatch for drugs/clinical trials and news about MIR96 

Transcripts
for MIR96 gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000362288(miRNA)

miRNA
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Inhib. RNA
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Primer
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GeneLoc Exon Structure


Expression
for MIR96 gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for MIR96:none

MIR96 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image

MIR96 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell 
Tissue Anatomical Compartment CellCategory (developmental path)
EyeOuter Nuclear LayerMature Rod CellsPhotoreceptors, Retina
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
    SABiosciences Custom PCR Arrays for MIR96
Primer
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In Situ
Assay Products: 
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Orthologs
for MIR96 gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
This gene was present in the common ancestor of human and mouse.

Orthologs for MIR96 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
mouse
(Mus musculus)		 Mammalia Mir965 microRNA 96   --   6 (12.52 cM) 30169446 


ENSEMBL Gene Tree for MIR96 (if available)
TreeFam Gene Tree for MIR96 (if available) 

Paralogs
for MIR96 gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

Genomic Variants
for MIR96 gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

6 NCBI SNPs in MIR96 are shown     About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance		Chr 7 posSequence#AA
Chg		TypeMore#Allele
freq		PopTotal
sample		More
----------
rs802744161,2
C,F,--128798437(+) TGCCCC/ACTTCA 1 -- ds50011Minor allele frequency- A:0.05EA 120
rs44212931,2
C,F,--128798516(+) GCCTGG/ACTGGG 1 -- ds50019Minor allele frequency- A:0.25NA WA CSA EA 370
rs1906114711,2
--129414038(+) TAAGTA/GTCCTC 1 -- ds50010--------
rs1475594271,2
--129414079(+) CACAGA/CAGGCT 1 -- ds50010--------
rs1490416651,2
--129414224(+) CAAGCA/GTGTGC 1 -- ds50010--------
rs1129034581,2
----128798447(+) ACAACC/ATGCAG 1 -- ds50011Minor allele frequency- A:0.50CSA 2

HapMap Linkage Disequilibrium report for MIR96 (129414532 - 129414609 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for MIR96
     3 CNVs: 70041 52089 52088
Human Gene Mutation Database (HGMD): MIR96

SABiosciences Cancer Mutation PCR Assays
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Disorders / Diseases
for MIR96 gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
MIR96 for disorders           About GeneDecksing

OMIM gene information: 611606   
OMIM disorders: 613074  
8 diseases for MIR96:    About MalaCards
deafness, autosomal dominant 50    hearing loss    microphthalmia    cervical cancer
cervicitis    pancreatic cancer    breast cancer    pancreatitis


Export disorders for MIR96 gene to outside databases

Publications
for MIR96 gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for MIR96 gene, integrated from 9 sources (see all 20):
(articles sorted by number of sources associating them with MIR96)		    Utopia: connect your pdf to the dynamic
world of online information

  1. Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. (PubMed id 19363479)1, 3 MencA-a A....Moreno-Pelayo M.A. (2009)
  2. A novel locus for autosomal dominant nonsyndromic hearing loss, DFNA50, maps to chromosome 7q32 between the DFNB17 and DFNB13 deafness loci. (PubMed id 14757864)1, 3 Modamio-Hoybjor S....Moreno F. (2004)
  3. Do microRNA 96, 145 and 221 expressions really aid in the prognosis of prostate carcinoma? (PubMed id 22864280)1 Kang S.G....Kim C.H. (2012)
  4. MiR-96 downregulates REV1 and RAD51 to promote cellula r sensitivity to cisplatin and PARP inhibition. (PubMed id 22761336)1 Wang Y....Taniguchi T. (2012)
  5. hsa-miR-96 up-regulates MAP4K1 and IRS1 and may functi on as a promising diagnostic marker in human bladder urothelial carcinomas. (PubMed id 21993544)1 Wang Y....Yang L. (2012)
  6. MicroRNAs miR-96, miR-124, and miR-199a regulate gene expression in human bone marrow-derived mesenchymal stem cells. (PubMed id 22441842)1 Laine S.K....Laitala-Leinonen T.K. (2012)
  7. A novel mutation within the MIR96 gene causes non-synd romic inherited hearing loss in an Italian family by altering pre-miRNA processi ng. (PubMed id 22038834)1 Solda G....Duga S. (2012)
  8. MicroRNA 96 is a post-transcriptional suppressor of an aplastic lymphoma kinase expression. (PubMed id 22414602)1 Vishwamitra D....Amin H.M. (2012)
  9. miR-183-96-182 cluster is overexpressed in prostate ti ssue and regulates zinc homeostasis in prostate cells. (PubMed id 22045813)1 Mihelich B.L....Nonn L. (2011)
  10. MicroRNA-96 directly inhibits I^-globin expression in human erythropoiesis. (PubMed id 21829531)1 Azzouzi I....Speer O. (2011)

External Searches for MIR96 gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing MIR96 gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 407053 HGNC: 31648 Ensembl:ENSG00000199158 miRBase: hsa-mir-96 euGenes: HUgn407053
ECgene: MIR96 H-InvDB: MIR96

Other Databases showing MIR96 gene

(According to HUGE)
About This Section
   --

Specialized Databases showing MIR96 gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for MIR96 Pharmacogenomics, SNPs, Pathways

Intellectual Property
for MIR96 gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for MIR96 gene:
Search GeneIP for patents involving MIR96

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
for MIR96 gene

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