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Aliases for MIR938 Gene

Subcategory (RNA class) for MIR938 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR938 Gene

  • MicroRNA 938 2 3 5
  • Hsa-Mir-938 3
  • MIRN938 3

External Ids for MIR938 Gene

Previous HGNC Symbols for MIR938 Gene

  • MIRN938

Previous GeneCards Identifiers for MIR938 Gene

  • GC10M029933
  • GC10M029629
  • GC10M029630
  • GC10M029718

Summaries for MIR938 Gene

Entrez Gene Summary for MIR938 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR938 Gene

MIR938 (MicroRNA 938) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR938 Gene

Genomics for MIR938 Gene

Regulatory Elements for MIR938 Gene

Enhancers for MIR938 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G029597 1 Ensembl ENCODE dbSUPER 0.7 +3.1 3084 3.3 ZNF121 SCRT2 ATF2 MIR604 RNU6-908P SVIL SVIL-AS1 MIR938 ENSG00000212411
GH10G029582 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.4 15393 8.9 PKNOX1 SIN3A RAD21 GATA2 SCRT2 ZNF143 FOS RCOR1 EGR2 ZNF654 SVIL MIR604 RNU6-908P SVIL-AS1 ENSG00000212411 MIR938
GH10G029602 0.8 Ensembl ENCODE dbSUPER 0.7 -1.0 -1013 0.8 RNU6-908P SVIL-AS1 GC10M029826 MIR938
GH10G029603 0.4 dbSUPER 0.7 +0.0 27 0.3 REST SVIL-AS1 MIR938 ENSG00000212411
GH10G029601 0.4 dbSUPER 0.7 +0.6 627 0.6 SCRT2 NR2F6 MIR938 ENSG00000212411
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR938 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR938 Gene

Chromosome:
10
Start:
29,602,264 bp from pter
End:
29,602,346 bp from pter
Size:
83 bases
Orientation:
Minus strand

Genomic View for MIR938 Gene

Genes around MIR938 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR938 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR938 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR938 Gene

ORGUL Member Location for MIR938 Gene

ORGUL Member Location for MIR938 gene

Proteins for MIR938 Gene

Post-translational modifications for MIR938 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR938 Gene

Domains & Families for MIR938 Gene

Gene Families for MIR938 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR938: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR938 Gene

Function for MIR938 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR938 Gene

Localization for MIR938 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR938 Gene

Pathways & Interactions for MIR938 Gene

SuperPathways for MIR938 Gene

No Data Available

Interacting Proteins for MIR938 Gene

Gene Ontology (GO) - Biological Process for MIR938 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR938 Gene

Drugs & Compounds for MIR938 Gene

No Compound Related Data Available

Transcripts for MIR938 Gene

mRNA/cDNA for MIR938 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR938 Gene

No ASD Table

Relevant External Links for MIR938 Gene

GeneLoc Exon Structure for
MIR938
ECgene alternative splicing isoforms for
MIR938

Expression for MIR938 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR938 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR938 Gene:

MIR938
genes like me logo Genes that share expression patterns with MIR938: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR938 Gene

Orthologs for MIR938 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR938 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-938 35
  • 98 (a)
OneToOne
Species where no ortholog for MIR938 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR938 Gene

ENSEMBL:
Gene Tree for MIR938 (if available)
TreeFam:
Gene Tree for MIR938 (if available)

Paralogs for MIR938 Gene

No data available for Paralogs for MIR938 Gene

Variants for MIR938 Gene

Sequence variations from dbSNP and Humsavar for MIR938 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1002602309 -- 29,603,555(+) TCATC(C/T)AATTT intron-variant, upstream-variant-2KB
rs1002634713 -- 29,603,788(+) TATGT(C/T)TTCAA intron-variant, upstream-variant-2KB
rs1003635410 -- 29,602,549(+) TCTTA(C/T)GAAGT intron-variant, upstream-variant-2KB
rs1003816153 -- 29,602,819(+) TGTCT(A/C)TACTA intron-variant, upstream-variant-2KB
rs1004061619 -- 29,603,185(+) TTAGT(A/C)CCAGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR938 Gene

Variant ID Type Subtype PubMed ID
nsv1129323 OTHER inversion 24896259
nsv831819 CNV loss 17160897

Relevant External Links for MIR938 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR938

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR938 Gene

Disorders for MIR938 Gene

Relevant External Links for MIR938

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR938

No disorders were found for MIR938 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR938 Gene

Publications for MIR938 Gene

  1. Genetic polymorphisms of IL17A and pri-microRNA-938, targeting IL17A 3'-UTR, influence susceptibility to gastric cancer. (PMID: 22537748) Arisawa T. … Shibata T. (Hum. Immunol. 2012) 3 64
  2. Patterns of known and novel small RNAs in human cervical cancer. (PMID: 17616659) Lui W.O. … Fire A. (Cancer Res. 2007) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR938 Gene

Sources for MIR938 Gene

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