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Aliases for MIR7-3HG Gene

Subcategory (RNA class) for MIR7-3HG Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for MIR7-3HG Gene

  • MIR7-3 Host Gene 2 3
  • Long Intergenic Non-Protein Coding RNA 306 2 3
  • MIR7-3 Host Gene (Non-Protein Coding) 2 3
  • NCRNA00306 3 4
  • LINC00306 3 4
  • C19orf30 3 4
  • PGSF1 3 4
  • Chromosome 19 Open Reading Frame 30 2
  • Pituitary Gland Specific Factor 1a 2
  • Pituitary Gland Specific Factor 1b 2
  • Pituitary Gland Specific Factor 1 3
  • Pituitary Gland-Specific Factor 1 4
  • Non-Protein Coding RNA 306 2
  • Uc002mbe.2 3
  • Huh7 3

External Ids for MIR7-3HG Gene

ORGUL Members for MIR7-3HG Gene

Previous HGNC Symbols for MIR7-3HG Gene

  • C19orf30
  • NCRNA00306
  • LINC00306

Previous GeneCards Identifiers for MIR7-3HG Gene

  • GC19P004771
  • GC19P004773
  • GC19P004775
  • GC19P004778

Summaries for MIR7-3HG Gene

GeneCards Summary for MIR7-3HG Gene

MIR7-3HG (MIR7-3 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR7-3HG Gene

Genomics for MIR7-3HG Gene

Genomic Location for MIR7-3HG Gene

Start:
4,769,105 bp from pter
End:
4,772,556 bp from pter
Size:
3,452 bases
Orientation:
Plus strand

Genomic View for MIR7-3HG Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR7-3HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR7-3HG Gene

No data available for Regulatory Elements for MIR7-3HG Gene

Proteins for MIR7-3HG Gene

  • Protein details for MIR7-3HG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6C7-PGSF1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by MIR7-3HG
    Protein Accession:
    Q8N6C7
    Secondary Accessions:
    • D6W630
    • Q17RJ9
    • Q8N6C6

    Protein attributes for MIR7-3HG Gene

    Size:
    128 amino acids
    Molecular mass:
    14321 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for MIR7-3HG Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MIR7-3HG Gene

Proteomics data for MIR7-3HG Gene at MOPED

Post-translational modifications for MIR7-3HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR7-3HG Gene

Domains for MIR7-3HG Gene

Gene Families for MIR7-3HG Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for MIR7-3HG Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR7-3HG: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR7-3HG Gene

Function for MIR7-3HG Gene

Phenotypes for MIR7-3HG Gene

GenomeRNAi human phenotypes for MIR7-3HG:
genes like me logo Genes that share phenotypes with MIR7-3HG: view

miRNA for MIR7-3HG Gene

miRTarBase miRNAs that target MIR7-3HG

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for MIR7-3HG Gene

Localization for MIR7-3HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR7-3HG Gene

Pathways for MIR7-3HG Gene

SuperPathways for MIR7-3HG Gene

No Data Available

Interacting Proteins for MIR7-3HG Gene

Gene Ontology (GO) - Biological Process for MIR7-3HG Gene

None

No data available for Pathways by source for MIR7-3HG Gene

Transcripts for MIR7-3HG Gene

Unigene Clusters for MIR7-3HG Gene

MIR7-3 host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIR7-3HG Gene

No ASD Table

Relevant External Links for MIR7-3HG Gene

GeneLoc Exon Structure for
MIR7-3HG
ECgene alternative splicing isoforms for
MIR7-3HG

Expression for MIR7-3HG Gene

mRNA expression in normal human tissues for MIR7-3HG Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for MIR7-3HG Gene

This gene is overexpressed in Pituitary (48.2).

SOURCE GeneReport for Unigene cluster for MIR7-3HG Gene Hs.326728

mRNA Expression by UniProt/SwissProt for MIR7-3HG Gene

Q8N6C7-PGSF1_HUMAN
Tissue specificity: High expression in pituitary gland and weak in pancreas.
genes like me logo Genes that share expressions with MIR7-3HG: view

No data available for Protein expression for MIR7-3HG Gene

Orthologs for MIR7-3HG Gene

Evolution for MIR7-3HG Gene

ENSEMBL:
Gene Tree for MIR7-3HG (if available)
TreeFam:
Gene Tree for MIR7-3HG (if available)

No data available for Orthologs for MIR7-3HG Gene

Paralogs for MIR7-3HG Gene

No data available for Paralogs for MIR7-3HG Gene

Variants for MIR7-3HG Gene

Sequence variations from dbSNP and Humsavar for MIR7-3HG Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2159187 -- 4,768,387(+) CAACT(A/C)ACATT upstream-variant-2KB
rs2885717 -- 4,772,437(-) GCTGG(A/G)GACAC nc-transcript-variant
rs3035527 -- 4,768,147(-) GAAAC(-/AG)AGAGA upstream-variant-2KB
rs3760951 -- 4,772,451(-) GCCCC(A/G)GACCA nc-transcript-variant
rs3760953 -- 4,772,395(-) tcacg(C/G)agctc nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR7-3HG Gene

Variant ID Type Subtype PubMed ID
nsv910847 CNV Loss 21882294

Relevant External Links for MIR7-3HG Gene

HapMap Linkage Disequilibrium report
MIR7-3HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR7-3HG Gene

Disorders for MIR7-3HG Gene

No disorders were found for MIR7-3HG Gene.

No data available for UniProtKB/Swiss-Prot for MIR7-3HG Gene

Publications for MIR7-3HG Gene

  1. Expression profile of active genes in the human pituitary gland. (PMID: 11854097) Tanaka S. … Amino N. (J. Mol. Endocrinol. 2002) 2 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease. (PMID: 24586183) Medici M. … Peeters R.P. (PLoS Genet. 2014) 3
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4

Products for MIR7-3HG Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR7-3HG
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR7-3HG
    • Block miRNA regulation of MIR7-3HG using miScript Target Protectors

    Sources for MIR7-3HG Gene

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