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Aliases for MIR6835 Gene

Subcategory (RNA class) for MIR6835 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR6835 Gene

  • MicroRNA 6835 2 3 5
  • MicroRNA Mir-6835 3
  • Hsa-Mir-6835 3

External Ids for MIR6835 Gene

Previous GeneCards Identifiers for MIR6835 Gene

  • GC06U902533
  • GC06P034931
  • GC06P035545
  • GC06P037821
  • GC06P038457
  • GC06P039046
  • GC06P039635

Summaries for MIR6835 Gene

Entrez Gene Summary for MIR6835 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6835 Gene

MIR6835 (MicroRNA 6835) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR6835 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR6835 Gene

Genomics for MIR6835 Gene

Regulatory Elements for MIR6835 Gene

Enhancers for MIR6835 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H034233 1.7 Ensembl ENCODE dbSUPER 0.7 +1.6 1584 17 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A MEF2D LEMD2 VPS52 TAF11 WDR46 HCG25 DAXX RPS10 RGL2 ITPR3 ZBTB22
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR6835 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR6835 Gene

Chromosome:
6
Start:
34,240,673 bp from pter
End:
34,240,736 bp from pter
Size:
64 bases
Orientation:
Plus strand

Genomic View for MIR6835 Gene

Genes around MIR6835 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR6835 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6835 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6835 Gene

Proteins for MIR6835 Gene

Post-translational modifications for MIR6835 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6835 Gene

Domains & Families for MIR6835 Gene

Gene Families for MIR6835 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR6835: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR6835 Gene

Function for MIR6835 Gene

Phenotypes From GWAS Catalog for MIR6835 Gene

Animal Model Products

miRNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6835 Gene

Localization for MIR6835 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6835 Gene

Pathways & Interactions for MIR6835 Gene

SuperPathways for MIR6835 Gene

No Data Available

Interacting Proteins for MIR6835 Gene

Gene Ontology (GO) - Biological Process for MIR6835 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR6835 Gene

Drugs & Compounds for MIR6835 Gene

No Compound Related Data Available

Transcripts for MIR6835 Gene

mRNA/cDNA for MIR6835 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6835 Gene

No ASD Table

Relevant External Links for MIR6835 Gene

GeneLoc Exon Structure for
MIR6835
ECgene alternative splicing isoforms for
MIR6835

Expression for MIR6835 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR6835 Gene:

MIR6835
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6835 Gene

Orthologs for MIR6835 Gene

Evolution for MIR6835 Gene

ENSEMBL:
Gene Tree for MIR6835 (if available)
TreeFam:
Gene Tree for MIR6835 (if available)

No data available for Orthologs for MIR6835 Gene

Paralogs for MIR6835 Gene

No data available for Paralogs for MIR6835 Gene

Variants for MIR6835 Gene

Sequence variations from dbSNP and Humsavar for MIR6835 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000097676 -- 34,239,965(+) TCTGA(A/C)AAAGT intron-variant, upstream-variant-2KB
rs1001055916 -- 34,238,801(+) CCAGC(A/T)GCAAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001088458 -- 34,239,013(+) CTGTG(C/G)TGTAA intron-variant, upstream-variant-2KB
rs1001264917 -- 34,241,206(+) GTGCT(G/T)AAAAC intron-variant, downstream-variant-500B
rs1001602667 -- 34,239,558(+) TGATC(G/T)TACAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR6835 Gene

Variant ID Type Subtype PubMed ID
nsv602863 CNV loss 21841781
nsv602865 CNV loss 21841781

Relevant External Links for MIR6835 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6835

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR6835 Gene

Disorders for MIR6835 Gene

Relevant External Links for MIR6835

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR6835

No disorders were found for MIR6835 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6835 Gene

Publications for MIR6835 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR6835 Gene

Sources for MIR6835 Gene

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