Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR6824 Gene

Subcategory (RNA class) for MIR6824 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR6824 Gene

  • MicroRNA 6824 2 3 5
  • MicroRNA Mir-6824 3
  • Hsa-Mir-6824 3

External Ids for MIR6824 Gene

Previous GeneCards Identifiers for MIR6824 Gene

  • GC03U902119

Summaries for MIR6824 Gene

Entrez Gene Summary for MIR6824 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR6824 Gene

MIR6824 (MicroRNA 6824) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds.

Additional gene information for MIR6824 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR6824 Gene

Genomics for MIR6824 Gene

Regulatory Elements for MIR6824 Gene

Enhancers for MIR6824 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H048632 1 ENCODE 0.7 -1.3 -1331 4 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 GLI4 ZNF2 GLIS2 ZNF143 WDR6 COL7A1 PFKFB4 UCN2 MIR6824 SLC26A6
GH03H048623 0.9 ENCODE 0.4 +9.4 9386 1 ELF3 FOXA2 MLX ARID4B RARA CREM MIXL1 THAP11 PAF1 USF2 WDR6 COL7A1 UCN2 PFKFB4 ATRIP ENSG00000244380 FBXW12 SPINK8 TMEM89 MIR6824
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR6824 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR6824 Gene

Chromosome:
3
Start:
48,633,636 bp from pter
End:
48,633,698 bp from pter
Size:
63 bases
Orientation:
Minus strand

Genomic View for MIR6824 Gene

Genes around MIR6824 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR6824 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR6824 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR6824 Gene

ORGUL Member Location for MIR6824 Gene

ORGUL Member Location for MIR6824 gene

Proteins for MIR6824 Gene

Post-translational modifications for MIR6824 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR6824 Gene

Domains & Families for MIR6824 Gene

Gene Families for MIR6824 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR6824: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR6824 Gene

Function for MIR6824 Gene

Phenotypes From GWAS Catalog for MIR6824 Gene

Animal Model Products

miRNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR6824 Gene

Localization for MIR6824 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR6824 Gene

Pathways & Interactions for MIR6824 Gene

genes like me logo Genes that share pathways with MIR6824: view

Interacting Proteins for MIR6824 Gene

Gene Ontology (GO) - Biological Process for MIR6824 Gene

None

No data available for SIGNOR curated interactions for MIR6824 Gene

Drugs & Compounds for MIR6824 Gene

No Compound Related Data Available

Transcripts for MIR6824 Gene

mRNA/cDNA for MIR6824 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR6824 Gene

No ASD Table

Relevant External Links for MIR6824 Gene

GeneLoc Exon Structure for
MIR6824
ECgene alternative splicing isoforms for
MIR6824

Expression for MIR6824 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR6824 Gene:

MIR6824
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR6824 Gene

Orthologs for MIR6824 Gene

Evolution for MIR6824 Gene

ENSEMBL:
Gene Tree for MIR6824 (if available)
TreeFam:
Gene Tree for MIR6824 (if available)

No data available for Orthologs for MIR6824 Gene

Paralogs for MIR6824 Gene

No data available for Paralogs for MIR6824 Gene

Variants for MIR6824 Gene

Sequence variations from dbSNP and Humsavar for MIR6824 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1002119602 -- 48,633,910(+) GAGAT(A/G)TGGCA intron-variant, upstream-variant-2KB
rs1002134143 -- 48,634,122(+) CTCCC(C/T)TCTAA intron-variant, upstream-variant-2KB
rs1003570204 -- 48,634,381(+) TCTCT(A/G)ACCTA intron-variant, upstream-variant-2KB
rs1003810369 -- 48,635,621(+) CCCGG(A/C)GACCT upstream-variant-2KB
rs1006542901 -- 48,634,550(+) CTGAC(A/C)TCGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR6824 Gene

Variant ID Type Subtype PubMed ID
esv3430072 CNV duplication 20981092
nsv523981 CNV loss 19592680
nsv590246 CNV loss 21841781
nsv590247 CNV loss 21841781
nsv818138 CNV gain 17921354
nsv834685 CNV loss 17160897
nsv954485 CNV deletion 24416366

Relevant External Links for MIR6824 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR6824

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR6824 Gene

Disorders for MIR6824 Gene

Relevant External Links for MIR6824

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR6824

No disorders were found for MIR6824 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR6824 Gene

Publications for MIR6824 Gene

  1. Discovery of hundreds of mirtrons in mouse and human small RNA data. (PMID: 22955976) Ladewig E … Lai EC (Genome research 2012) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR6824 Gene

Sources for MIR6824 Gene

Content
Loading form....