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Aliases for MIR656 Gene

Subcategory (RNA class) for MIR656 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR656 Gene

  • MicroRNA 656 2 3 5
  • Hsa-Mir-656 3
  • Mir-656 3
  • MIRN656 3

External Ids for MIR656 Gene

ORGUL Members for MIR656 Gene

Previous HGNC Symbols for MIR656 Gene

  • MIRN656

Previous GeneCards Identifiers for MIR656 Gene

  • GC14P100844
  • GC14P100934
  • GC14P101535
  • GC14P101563
  • GC14P101596
  • GC14P101635
  • GC14P101663
  • GC14P101698
  • GC14P101735
  • GC14P101775
  • GC14P101833
  • GC14P101973
  • GC14P102170
  • GC14P101277
  • GC14P101896
  • GC14P102210
  • GC14P102377
  • GC14P102557

Summaries for MIR656 Gene

Entrez Gene Summary for MIR656 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR656 Gene

MIR656 (MicroRNA 656) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR656 Gene

Genomics for MIR656 Gene

Regulatory Elements for MIR656 Gene

Enhancers for MIR656 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G101096 1.1 FANTOM5 ENCODE 11.4 +31.6 31624 3.2 CTCF SUZ12 JUN ZIC2 RAD21 ZNF335 GLIS2 ZNF366 GATA2 POLR2A RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR656 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR656 Gene

Chromosome:
14
Start:
101,066,724 bp from pter
End:
101,066,801 bp from pter
Size:
78 bases
Orientation:
Plus strand

Genomic View for MIR656 Gene

Genes around MIR656 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR656 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR656 Gene

Proteins for MIR656 Gene

Post-translational modifications for MIR656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR656 Gene

Domains & Families for MIR656 Gene

Gene Families for MIR656 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR656: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR656 Gene

Function for MIR656 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR656 Gene

Localization for MIR656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR656 Gene

Pathways & Interactions for MIR656 Gene

SuperPathways for MIR656 Gene

No Data Available

Interacting Proteins for MIR656 Gene

Gene Ontology (GO) - Biological Process for MIR656 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR656 Gene

Drugs & Compounds for MIR656 Gene

No Compound Related Data Available

Transcripts for MIR656 Gene

mRNA/cDNA for MIR656 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR656 Gene

No ASD Table

Relevant External Links for MIR656 Gene

GeneLoc Exon Structure for
MIR656
ECgene alternative splicing isoforms for
MIR656

Expression for MIR656 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR656 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR656 Gene:

MIR656
genes like me logo Genes that share expression patterns with MIR656: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR656 Gene

Orthologs for MIR656 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR656 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-656 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-656 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 35
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir382 35
  • 50 (a)
ManyToMany
Species where no ortholog for MIR656 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR656 Gene

ENSEMBL:
Gene Tree for MIR656 (if available)
TreeFam:
Gene Tree for MIR656 (if available)

Paralogs for MIR656 Gene

No data available for Paralogs for MIR656 Gene

Variants for MIR656 Gene

Sequence variations from dbSNP and Humsavar for MIR656 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000697312 -- 101,066,260(+) CGGGG(C/G)AGCTA downstream-variant-500B, upstream-variant-2KB
rs1003049499 -- 101,065,113(+) TTCTG(G/T)GAAGA upstream-variant-2KB
rs1003932318 -- 101,064,797(+) ATGGT(C/T)AGCCA downstream-variant-500B, upstream-variant-2KB
rs1004937700 -- 101,065,745(+) GAGTC(A/G)CTGCC downstream-variant-500B, upstream-variant-2KB
rs1006160079 -- 101,064,852(+) ATGCC(C/T)CTGTG downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR656 Gene

Variant ID Type Subtype PubMed ID
nsv1040993 CNV gain 25217958
nsv509551 CNV insertion 20534489
nsv565859 CNV gain 21841781
nsv565860 CNV gain 21841781

Relevant External Links for MIR656 Gene

Human Gene Mutation Database (HGMD)
MIR656
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR656

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR656 Gene

Disorders for MIR656 Gene

Relevant External Links for MIR656

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR656

No disorders were found for MIR656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR656 Gene

Publications for MIR656 Gene

  1. miR-656 inhibits glioma tumorigenesis through repression of BMPR1A. (PMID: 24480809) Guo M. … Lin Z. (Carcinogenesis 2014) 3 64
  2. Birth and expression evolution of mammalian microRNA genes. (PMID: 23034410) Meunier J. … Kaessmann H. (Genome Res. 2013) 3 64
  3. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 3 64
  4. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR656 Gene

Sources for MIR656 Gene

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