Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR654 Gene

Subcategory (RNA class) for MIR654 Gene


Quality Score for this RNA gene is


Aliases for MIR654 Gene

  • MicroRNA 654 2 3 5
  • Hsa-Mir-654 3
  • Mir-654 3
  • MIRN654 3

External Ids for MIR654 Gene

ORGUL Members for MIR654 Gene

Previous HGNC Symbols for MIR654 Gene

  • MIRN654

Previous GeneCards Identifiers for MIR654 Gene

  • GC14P100822
  • GC14P100913
  • GC14P101511
  • GC14P101568
  • GC14P101601
  • GC14P101638
  • GC14P101666
  • GC14P101701
  • GC14P101738
  • GC14P101778
  • GC14P101836
  • GC14P101976
  • GC14P102174
  • GC14P101249
  • GC14P101856
  • GC14P102107
  • GC14P102345
  • GC14P102515

Summaries for MIR654 Gene

Entrez Gene Summary for MIR654 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR654 Gene

MIR654 (MicroRNA 654) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR654 Gene

Genomics for MIR654 Gene

Regulatory Elements for MIR654 Gene

Enhancers for MIR654 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G101096 1.1 FANTOM5 ENCODE 10.7 +58.1 58129 3.2 CTCF SUZ12 JUN ZIC2 RAD21 ZNF335 GLIS2 ZNF366 GATA2 POLR2A RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14G101215 1 ENCODE 9.9 +176.5 176506 2.8 HDGF FOXA2 ARID4B ZNF48 TCF12 GATA2 CAVIN1 ZNF592 SSRP1 ZNF658 DYNC1H1 YY1 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-4 SNORD113-8 SNORD113-9 MIR543 ENSG00000272444
GH14G101287 1 ENCODE 9.4 +248.7 248702 2.5 FOXA2 ATF1 MLX ZFP64 ARID4B ZNF48 YY1 SP5 ZHX2 NFYC MEG3 MIR1185-2 MIR381 MIR487B MIR539 MIR544A MIR889 MIR655 MIR1185-1 MIR300
GH14G101004 0.8 Ensembl ENCODE 10.9 -35.1 -35135 1.9 GATA3 MNT MYC ZIC2 TCF7L2 MIR134 MIR487A MIR154 MIR323B MIR485 MIR377 MIR496 MIR376C MIR1185-1 MIR1185-2
GH14G101333 0.9 ENCODE 8.9 +294.8 294838 2.2 ELF3 FOXA2 ARID4B ZSCAN9 RAD21 RARA YY1 CREM MIXL1 THAP11 MIR381 MIR487B MIR539 MIR544A MIR655 MIR889 MIR376C MIR1185-1 MIR1185-2 MIR300
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR654 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR654 Gene

101,040,219 bp from pter
101,040,299 bp from pter
81 bases
Plus strand

Genomic View for MIR654 Gene

Genes around MIR654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR654 Gene

Proteins for MIR654 Gene

Post-translational modifications for MIR654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR654 Gene

Domains & Families for MIR654 Gene

Gene Families for MIR654 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR654: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR654 Gene

Function for MIR654 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR654 Gene

Localization for MIR654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR654 Gene

Pathways & Interactions for MIR654 Gene

SuperPathways for MIR654 Gene

No Data Available

Interacting Proteins for MIR654 Gene

Gene Ontology (GO) - Biological Process for MIR654 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR654 Gene

Drugs & Compounds for MIR654 Gene

No Compound Related Data Available

Transcripts for MIR654 Gene

mRNA/cDNA for MIR654 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR654 Gene

No ASD Table

Relevant External Links for MIR654 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR654 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR654 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR654 Gene:

genes like me logo Genes that share expression patterns with MIR654: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR654 Gene

Orthologs for MIR654 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR654 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-654 35
  • 100 (a)
(Bos Taurus)
Mammalia bta-mir-654 35
  • 91 (a)
(Mus musculus)
Mammalia Mir654 35
  • 74 (a)
Species where no ortholog for MIR654 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR654 Gene

Gene Tree for MIR654 (if available)
Gene Tree for MIR654 (if available)

Paralogs for MIR654 Gene

No data available for Paralogs for MIR654 Gene

Variants for MIR654 Gene

Sequence variations from dbSNP and Humsavar for MIR654 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000454623 -- 101,038,656(+) TGGTG(G/T)TGGTG upstream-variant-2KB
rs1003009472 -- 101,039,870(+) GAACA(C/T)GTGCT downstream-variant-500B, upstream-variant-2KB
rs1005972957 -- 101,040,739(+) CTCAA(A/G)CACAG downstream-variant-500B, upstream-variant-2KB
rs1006274237 -- 101,040,361(+) CTACG(A/G)GACTG downstream-variant-500B, upstream-variant-2KB
rs1008717797 -- 101,038,899(+) ACATT(G/T)GTCAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR654 Gene

Variant ID Type Subtype PubMed ID
esv3635521 CNV gain 21293372
nsv1040993 CNV gain 25217958
nsv565859 CNV gain 21841781
nsv565860 CNV gain 21841781

Relevant External Links for MIR654 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR654 Gene

Disorders for MIR654 Gene

Relevant External Links for MIR654

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR654 Gene

Publications for MIR654 Gene

  1. MicroRNAs, miR-154, miR-299-5p, miR-376a, miR-376c, miR-377, miR-381, miR-487b, miR-485-3p, miR-495 and miR-654-3p, mapped to the 14q32.31 locus, regulate proliferation, apoptosis, migration and invasion in metastatic prostate cancer cells. (PMID: 24166498) Formosa A. … Candi E. (Oncogene 2014) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  5. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3 64

Products for MIR654 Gene

Sources for MIR654 Gene

Loading form....