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Aliases for MIR649 Gene

Subcategory (RNA class) for MIR649 Gene


Quality Score for this RNA gene is


Aliases for MIR649 Gene

  • MicroRNA 649 2 3
  • Hsa-Mir-649 3
  • MIRN649 3

External Ids for MIR649 Gene

Previous HGNC Symbols for MIR649 Gene

  • MIRN649

Previous GeneCards Identifiers for MIR649 Gene

  • GC22M019720
  • GC22M021388

Summaries for MIR649 Gene

Entrez Gene Summary for MIR649 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR649 Gene

MIR649 (MicroRNA 649) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR649 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR649

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR649 Gene

Genomics for MIR649 Gene

Genomic Location for MIR649 Gene

21,034,176 bp from pter
21,034,272 bp from pter
97 bases
Minus strand

Genomic View for MIR649 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR649 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR649 Gene

ORGUL Member Location for MIR649 Gene

ORGUL Member Location for MIR649 gene

No data available for Regulatory Elements for MIR649 Gene

Proteins for MIR649 Gene

Post-translational modifications for MIR649 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR649 Gene

Domains for MIR649 Gene

Gene Families for MIR649 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR649: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR649 Gene

Function for MIR649 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR649 Gene

Localization for MIR649 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR649 Gene

Pathways for MIR649 Gene

SuperPathways for MIR649 Gene

No Data Available

Interacting Proteins for MIR649 Gene

Gene Ontology (GO) - Biological Process for MIR649 Gene


No data available for Pathways by source for MIR649 Gene

Transcripts for MIR649 Gene

fRNAdb Secondary structures for MIR649 Gene

  • hsa-miR-649_MIMAT0003319_Homo_sapiens_miR-649_mature

mRNA/cDNA for MIR649 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR649 Gene

No ASD Table

Relevant External Links for MIR649 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR649 Gene

mRNA expression in normal human tissues for MIR649 Gene

genes like me logo Genes that share expressions with MIR649: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for MIR649 Gene

Orthologs for MIR649 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR649 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia -- 36
  • 56 (a)
(Canis familiaris)
Mammalia -- 36
  • 46 (a)
(Pan troglodytes)
Mammalia ptr-mir-649 36
  • 89 (a)
Species with no ortholog for MIR649:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR649 Gene

Gene Tree for MIR649 (if available)
Gene Tree for MIR649 (if available)

Paralogs for MIR649 Gene

No data available for Paralogs for MIR649 Gene

Variants for MIR649 Gene

Sequence variations from dbSNP and Humsavar for MIR649 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs5997191 -- 21,035,340(+) gagga(C/T)ggctt upstream-variant-2KB
rs6005327 -- 21,035,373(+) cagtg(A/G)gcttg upstream-variant-2KB
rs35177070 -- 21,036,141(+) TGGGG(-/G)TTTTC upstream-variant-2KB
rs76090686 -- 21,035,604(+) CTACA(C/T)TGACA upstream-variant-2KB
rs139275843 -- 21,036,064(+) TGTCT(C/T)AGCCT upstream-variant-2KB

Relevant External Links for MIR649 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for MIR649 Gene

Disorders for MIR649 Gene

No disorders were found for MIR649 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for MIR649 Gene

Publications for MIR649 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3

Products for MIR649 Gene

Sources for MIR649 Gene

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