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Aliases for MIR647 Gene

Subcategory (RNA class) for MIR647 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR647 Gene

  • MicroRNA 647 2 3 5
  • Hsa-Mir-647 3
  • MIRN647 3

External Ids for MIR647 Gene

Previous HGNC Symbols for MIR647 Gene

  • MIRN647

Previous GeneCards Identifiers for MIR647 Gene

  • GC20M062045
  • GC20M062573

Summaries for MIR647 Gene

Entrez Gene Summary for MIR647 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR647 Gene

MIR647 (MicroRNA 647) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR647 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR647 Gene

Genomics for MIR647 Gene

Regulatory Elements for MIR647 Gene

Enhancers for MIR647 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F063657 0.2 ENCODE 41.3 +284.3 284292 2.7 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 LINC00029 MIR647 RTEL1 LOC105372725 GMEB2 ENSG00000237371 MIR1914 LINC01056 PRPF6 SLC2A4RG
GH20F063452 1.2 FANTOM5 Ensembl ENCODE 31.8 +487.9 487894 5.5 HDGF PKNOX1 CREB3L1 ZNF207 FOS ZNF263 SP3 JUNB ZHX2 REST MIR647 RTEL1 ENSG00000226390 EEF1A2 ZNF512B KCNQ2 ARFGAP1 TNFRSF6B LOC105372725 MIR1914
GH20F063260 0.2 ENCODE 28.4 +681.2 681231 1.7 SAP130 ZNF133 KLF17 NFXL1 YBX1 ZIC2 ZBTB40 ZKSCAN1 FOSL1 ZNF791 BIRC7 MIR647 MIR1914 MIR4758 NKAIN4 ENSG00000237371 COL20A1 RNU6-994P ENSG00000226332 PRPF6
GH20F063680 1.1 Ensembl ENCODE 16.2 +249.6 249635 24.9 HDGF PKNOX1 MLX ZFP64 SIN3A ZNF548 FOS PAF1 ZNF263 SP3 LIME1 RTEL1 MIR647 MIR1914 SLC2A4RG ENSG00000229299 ENSG00000237371 ARFRP1 C20orf181 ZBTB46-AS1
GH20F063893 1 FANTOM5 Ensembl ENCODE 15.7 +44.8 44835 7.8 HDGF PKNOX1 ARNT MLX WRNIP1 ARID4B SIN3A DMAP1 SLC30A9 ZNF766 MIR647 MIR1914 GMEB2 PRPF6 RGS19 RTEL1 OPRL1 ZBTB46 C20orf181 FNDC11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR647 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR647 Gene

Chromosome:
20
Start:
63,942,631 bp from pter
End:
63,942,726 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for MIR647 Gene

Genes around MIR647 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR647 Gene

ORGUL Member Location for MIR647 Gene

ORGUL Member Location for MIR647 gene

Proteins for MIR647 Gene

Post-translational modifications for MIR647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR647 Gene

Domains & Families for MIR647 Gene

Gene Families for MIR647 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR647: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR647 Gene

Function for MIR647 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR647 Gene

Localization for MIR647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR647 Gene

Pathways & Interactions for MIR647 Gene

SuperPathways for MIR647 Gene

No Data Available

Interacting Proteins for MIR647 Gene

Gene Ontology (GO) - Biological Process for MIR647 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR647 Gene

Transcripts for MIR647 Gene

mRNA/cDNA for MIR647 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR647 Gene

No ASD Table

Relevant External Links for MIR647 Gene

GeneLoc Exon Structure for
MIR647
ECgene alternative splicing isoforms for
MIR647

Expression for MIR647 Gene

mRNA expression in normal human tissues for MIR647 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR647 Gene:

MIR647
genes like me logo Genes that share expression patterns with MIR647: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR647 Gene

Orthologs for MIR647 Gene

Evolution for MIR647 Gene

ENSEMBL:
Gene Tree for MIR647 (if available)
TreeFam:
Gene Tree for MIR647 (if available)

No data available for Orthologs for MIR647 Gene

Paralogs for MIR647 Gene

No data available for Paralogs for MIR647 Gene

Variants for MIR647 Gene

Sequence variations from dbSNP and Humsavar for MIR647 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111545918 -- 63,942,199(+) GCCGG(A/G)AATGG intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs111873930 -- 63,943,307(+) ATGTC(C/T)GTAGT intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs112538127 -- 63,942,195(+) CGGGG(C/T)CGGGA intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs112709026 -- 63,942,256(+) CGGGG(C/T)CGGGA intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs113363637 -- 63,942,283(+) CAGAA(A/G)AGAGG intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MIR647 Gene

Variant ID Type Subtype PubMed ID
nsv428381 CNV gain+loss 18775914
nsv469773 CNV gain 16826518
nsv509784 CNV insertion 20534489
nsv586695 CNV loss 21841781
nsv953309 CNV deletion 24416366

Relevant External Links for MIR647 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR647

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR647 Gene

Disorders for MIR647 Gene

Relevant External Links for MIR647

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR647

No disorders were found for MIR647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR647 Gene

Publications for MIR647 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 1 3 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR647 Gene

Sources for MIR647 Gene

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