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Aliases for MIR641 Gene

Subcategory (RNA class) for MIR641 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR641 Gene

  • MicroRNA 641 2 3 5
  • Hsa-Mir-641 3
  • Mir-641 3
  • MIRN641 3

External Ids for MIR641 Gene

Previous HGNC Symbols for MIR641 Gene

  • MIRN641

Previous GeneCards Identifiers for MIR641 Gene

  • GC19M045481
  • GC19M040788

Summaries for MIR641 Gene

Entrez Gene Summary for MIR641 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR641 Gene

MIR641 (MicroRNA 641) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR641 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR641

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR641 Gene

Genomics for MIR641 Gene

Regulatory Elements for MIR641 Gene

Enhancers for MIR641 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F041217 1 FANTOM5 ENCODE 5.9 -940.4 -940433 10.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF302 ZNF416 ZNF526 SNRPA ZNF574 ENSG00000269843 CCDC97 ENSG00000205041 ENSG00000268366 ITPKC SERTAD3 RPS19
GH19F040277 1 Ensembl ENCODE 0.8 +0.1 64 10.4 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF302 ENSG00000269069 MAP3K10 ENSG00000205041 PRX RPS16 ZNF546 NUMBL SUPT5H C19orf47 ENSG00000269843
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR641 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR641 Gene

Chromosome:
19
Start:
40,282,543 bp from pter
End:
40,282,641 bp from pter
Size:
99 bases
Orientation:
Minus strand

Genomic View for MIR641 Gene

Genes around MIR641 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR641 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR641 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR641 Gene

ORGUL Member Location for MIR641 Gene

ORGUL Member Location for MIR641 gene

Proteins for MIR641 Gene

Post-translational modifications for MIR641 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR641 Gene

Domains & Families for MIR641 Gene

Gene Families for MIR641 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR641: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR641 Gene

Function for MIR641 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR641 Gene

Localization for MIR641 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR641 Gene

Pathways & Interactions for MIR641 Gene

SuperPathways for MIR641 Gene

No Data Available

Interacting Proteins for MIR641 Gene

Gene Ontology (GO) - Biological Process for MIR641 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR641 Gene

Transcripts for MIR641 Gene

fRNAdb Secondary structures for MIR641 Gene

  • hsa-mir-641_MI0003656_Homo_sapiens_miR-641_stem-loop_hairpin

mRNA/cDNA for MIR641 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR641 Gene

No ASD Table

Relevant External Links for MIR641 Gene

GeneLoc Exon Structure for
MIR641
ECgene alternative splicing isoforms for
MIR641

Expression for MIR641 Gene

mRNA expression in normal human tissues for MIR641 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR641 Gene:

MIR641
genes like me logo Genes that share expression patterns with MIR641: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR641 Gene

Orthologs for MIR641 Gene

Evolution for MIR641 Gene

ENSEMBL:
Gene Tree for MIR641 (if available)
TreeFam:
Gene Tree for MIR641 (if available)

No data available for Orthologs for MIR641 Gene

Paralogs for MIR641 Gene

No data available for Paralogs for MIR641 Gene

Variants for MIR641 Gene

Sequence variations from dbSNP and Humsavar for MIR641 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs111252247 -- 40,284,211(+) TGGGG(A/G)GAAGA intron-variant, upstream-variant-2KB
rs117431069 -- 40,284,595(+) AAATA(A/C)GCCCC intron-variant, upstream-variant-2KB
rs118098588 -- 40,284,152(+) CAAAT(C/G)AGAGG intron-variant, upstream-variant-2KB
rs11880261 -- 40,282,734(+) TAAGA(C/T)GCGGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs12459061 -- 40,283,508(+) GCTGC(A/G)GACTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR641 Gene

Variant ID Type Subtype PubMed ID
esv1005660 CNV deletion 20482838
esv2758761 CNV gain 17122850
esv3644344 CNV gain 21293372
esv3644345 CNV gain 21293372
nsv1057052 CNV loss 25217958
nsv1160618 CNV deletion 26073780

Relevant External Links for MIR641 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR641

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR641 Gene

Disorders for MIR641 Gene

Relevant External Links for MIR641

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR641

No disorders were found for MIR641 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR641 Gene

Publications for MIR641 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 1 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR641 Gene

Sources for MIR641 Gene

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