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Aliases for MIR627 Gene

Subcategory (RNA class) for MIR627 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR627 Gene

  • MicroRNA 627 2 3 5
  • Hsa-Mir-627 3
  • Mir-627 3
  • MIRN627 3

External Ids for MIR627 Gene

Previous HGNC Symbols for MIR627 Gene

  • MIRN627

Previous GeneCards Identifiers for MIR627 Gene

  • GC15M040280
  • GC15M042491

Summaries for MIR627 Gene

Entrez Gene Summary for MIR627 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR627 Gene

MIR627 (MicroRNA 627) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR627 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR627

Additional gene information for MIR627 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR627 Gene

Genomics for MIR627 Gene

GeneHancer (GH) Regulatory Elements for MIR627 Gene

Promoters and enhancers for MIR627 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I042455 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 9.8 -257.6 -257567 3.9 SP1 USF1 POLR2A SIN3A EBF1 ZNF106 CAPN3 GANC TMEM87A MIR627 LRRC57 GC15P042438
GH15I042158 Enhancer 1 Ensembl ENCODE 11.5 +41.0 41047 1 HDAC1 PKNOX1 ATF1 FOS ATF7 CREM PAF1 USF2 ZEB2 ZNF592 GC15M042161 GC15P042157 PLA2G4F PIR62541 MIR627 GANC VPS39
GH15I042257 Enhancer 0.4 FANTOM5 10.6 -57.6 -57646 0 ZNF766 MIR627 CAPN3 PLA2G4E GANC TMEM87A LOC105370795
GH15I042454 Enhancer 0.4 Ensembl dbSUPER 9.8 -255.0 -255035 0.2 CAPN3 GANC TMEM87A MIR627 LRRC57 ADAL GC15P042438 ZNF106
GH15I042171 Enhancer 0.3 FANTOM5 12 +28.4 28355 0.2 MIR627 TMEM87A GANC CAPN3 EHD4 PIR49567 PIR62541 GC15M042161 VPS39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR627 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR627 Gene

Genomic Locations for MIR627 Gene
chr15:42,199,570-42,199,666
(GRCh38/hg38)
Size:
97 bases
Orientation:
Minus strand
chr15:42,491,768-42,491,864
(GRCh37/hg19)

Genomic View for MIR627 Gene

Genes around MIR627 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR627 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR627 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR627 Gene

ORGUL Member Location for MIR627 Gene

ORGUL Member Location for MIR627 gene

Proteins for MIR627 Gene

Post-translational modifications for MIR627 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR627 Gene

Domains & Families for MIR627 Gene

Gene Families for MIR627 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR627: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR627 Gene

Function for MIR627 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR627 Gene

Localization for MIR627 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR627 Gene

Pathways & Interactions for MIR627 Gene

SuperPathways for MIR627 Gene

No Data Available

Interacting Proteins for MIR627 Gene

Gene Ontology (GO) - Biological Process for MIR627 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR627 Gene

Drugs & Compounds for MIR627 Gene

No Compound Related Data Available

Transcripts for MIR627 Gene

fRNAdb Secondary structures for MIR627 Gene

  • hsa-miR-627-5p_MIMAT0003296_Homo_sapiens_miR-627-5p_mature

mRNA/cDNA for MIR627 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR627 Gene

No ASD Table

Relevant External Links for MIR627 Gene

GeneLoc Exon Structure for
MIR627
ECgene alternative splicing isoforms for
MIR627

Expression for MIR627 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR627 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR627 Gene:

MIR627
genes like me logo Genes that share expression patterns with MIR627: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR627 Gene

Orthologs for MIR627 Gene

Evolution for MIR627 Gene

ENSEMBL:
Gene Tree for MIR627 (if available)
TreeFam:
Gene Tree for MIR627 (if available)

No data available for Orthologs for MIR627 Gene

Paralogs for MIR627 Gene

No data available for Paralogs for MIR627 Gene

Variants for MIR627 Gene

Sequence variations from dbSNP and Humsavar for MIR627 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1001704124 -- 42,201,163(-) T/C upstream_transcript_variant
rs1002908654 -- 42,199,627(-) A/C non_coding_transcript_variant
rs1004193415 -- 42,199,438(-) A/C downstream_transcript_variant
rs1004628523 -- 42,199,419(-) G/A downstream_transcript_variant
rs1007394375 -- 42,201,141(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR627 Gene

Variant ID Type Subtype PubMed ID
nsv1507 CNV insertion 18451855
nsv471683 CNV gain+loss 15918152
nsv832985 CNV loss 17160897

Additional Variant Information for MIR627 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR627

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR627 Gene

Disorders for MIR627 Gene

Additional Disease Information for MIR627

No disorders were found for MIR627 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR627 Gene

Publications for MIR627 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 1 3 58
  2. A three-miRNA signature as promising non-invasive diagnostic marker for gastric cancer. (PMID: 26607322) Shin VY … Chu KM (Molecular cancer 2015) 3 58
  3. MicroRNA-627 mediates the epigenetic mechanisms of vitamin D to suppress proliferation of human colorectal cancer cells and growth of xenograft tumors in mice. (PMID: 23619147) Padi SK … Guo B (Gastroenterology 2013) 3 58
  4. The repertoire and features of human platelet microRNAs. (PMID: 23226537) Plé H … Provost P (PloS one 2012) 3 58
  5. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58

Products for MIR627 Gene

Sources for MIR627 Gene

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