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Aliases for MIR623 Gene

Subcategory (RNA class) for MIR623 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR623 Gene

  • MicroRNA 623 2 3 5
  • Hsa-Mir-623 3
  • MIRN623 3

External Ids for MIR623 Gene

ORGUL Members for MIR623 Gene

Previous HGNC Symbols for MIR623 Gene

  • MIRN623

Previous GeneCards Identifiers for MIR623 Gene

  • GC13P098807
  • GC13P100008

Summaries for MIR623 Gene

Entrez Gene Summary for MIR623 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR623 Gene

MIR623 (MicroRNA 623) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR623 Gene

Genomics for MIR623 Gene

Regulatory Elements for MIR623 Gene

Enhancers for MIR623 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G099295 2 FANTOM5 Ensembl ENCODE dbSUPER 12 -50.2 -50168 20.9 HDGF PKNOX1 FOXA2 ARNT WRNIP1 FEZF1 ZNF766 CBX5 FOS ZNF263 GPR183 MIR623 DOCK9 UBAC2 GPR18 CLYBL GC13P099277
GH13G099319 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -34.5 -34453 4.4 PKNOX1 ARNT FEZF1 ZNF2 KLF7 FOS ZNF202 JUNB TBX21 CBX8 MIR623 GPR18 UBAC2 GPR183 GC13M099261
GH13G099279 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -73.9 -73894 5.6 PKNOX1 TBL1XR1 BMI1 RAD21 YY1 ZNF121 RELB ETV6 IKZF2 CREM UBAC2 GPR183 MIR623 GPR18 DOCK9 GC13P099277
GH13G099431 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +77.7 77697 5.0 PKNOX1 ATF1 WRNIP1 ARID4B DMAP1 TCF12 SLC30A9 CBX5 ZNF143 FOS GPR18 LINC00449 TM9SF2 MIR623 GPR183 CCR12P GC13P099473
GH13G099379 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.7 +26.3 26276 5.0 HDGF PKNOX1 FOXA2 ZSCAN4 WRNIP1 ZNF121 RELB ETV6 IKZF2 CREM UBAC2 GPR18 GPR183 MIR623 DOCK9 CLYBL GC13P099385 HMGB3P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR623 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR623 Gene

Chromosome:
13
Start:
99,356,131 bp from pter
End:
99,356,228 bp from pter
Size:
98 bases
Orientation:
Plus strand

Genomic View for MIR623 Gene

Genes around MIR623 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR623 Gene

Proteins for MIR623 Gene

Post-translational modifications for MIR623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR623 Gene

Domains & Families for MIR623 Gene

Gene Families for MIR623 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR623: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR623 Gene

Function for MIR623 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR623 Gene

Localization for MIR623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR623 Gene

Pathways & Interactions for MIR623 Gene

SuperPathways for MIR623 Gene

No Data Available

Interacting Proteins for MIR623 Gene

Gene Ontology (GO) - Biological Process for MIR623 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR623 Gene

Transcripts for MIR623 Gene

mRNA/cDNA for MIR623 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR623 Gene

No ASD Table

Relevant External Links for MIR623 Gene

GeneLoc Exon Structure for
MIR623
ECgene alternative splicing isoforms for
MIR623

Expression for MIR623 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR623 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR623 Gene:

MIR623
genes like me logo Genes that share expression patterns with MIR623: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR623 Gene

Orthologs for MIR623 Gene

Evolution for MIR623 Gene

ENSEMBL:
Gene Tree for MIR623 (if available)
TreeFam:
Gene Tree for MIR623 (if available)

No data available for Orthologs for MIR623 Gene

Paralogs for MIR623 Gene

No data available for Paralogs for MIR623 Gene

Variants for MIR623 Gene

Sequence variations from dbSNP and Humsavar for MIR623 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000734924 -- 99,355,362(+) AAGGC(C/G)ACTGT intron-variant, upstream-variant-2KB
rs1002941386 -- 99,355,727(+) CAGGA(C/T)GCAGG intron-variant, upstream-variant-2KB
rs1003564394 -- 99,356,015(+) CTGAA(C/G)CTGTT intron-variant, upstream-variant-2KB
rs1006309267 -- 99,356,175(+) GCATC(C/T)TAAGC intron-variant, nc-transcript-variant
rs1006361775 -- 99,355,880(+) CATCC(C/G)ATGGC intron-variant, upstream-variant-2KB

Relevant External Links for MIR623 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR623

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR623 Gene

Disorders for MIR623 Gene

Relevant External Links for MIR623

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR623

No disorders were found for MIR623 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR623 Gene

Publications for MIR623 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  2. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3 64

Products for MIR623 Gene

Sources for MIR623 Gene

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