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Aliases for MIR620 Gene

Subcategory (RNA class) for MIR620 Gene


Quality Score for this RNA gene is


Aliases for MIR620 Gene

  • MicroRNA 620 2 3 5
  • Hsa-Mir-620 3
  • MIRN620 3

External Ids for MIR620 Gene

Previous HGNC Symbols for MIR620 Gene

  • MIRN620

Previous GeneCards Identifiers for MIR620 Gene

  • GC12U901028
  • GC12M115072
  • GC12M116586

Summaries for MIR620 Gene

Entrez Gene Summary for MIR620 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR620 Gene

MIR620 (MicroRNA 620) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR620 Gene

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR620

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR620 Gene

Genomics for MIR620 Gene

Regulatory Elements for MIR620 Gene

Enhancers for MIR620 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G116121 2 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +25.8 25807 3.5 PKNOX1 ARNT CREB3L1 MLX SIN3A FEZF1 ZNF2 YY1 ZNF766 CBX5 MAP1LC3B2 MIR620 MED13L GC12M116089 GC12P116137
GH12G116171 1.3 Ensembl ENCODE dbSUPER 12 -23.6 -23611 1.5 HDAC1 PKNOX1 ATF1 SIN3A RAD21 FOS CREM ZNF654 ZNF362 CEBPB MIR620 MED13L SNRPGP18 ENSG00000258337
GH12G116118 0.9 dbSUPER 11.5 +29.3 29347 1.0 ATF1 ZNF766 EGR1 ELK1 KLF13 CAVIN1 ZBTB11 CEBPB USF2 HDAC8 MIR620 GC12M116089 GC12P116137
GH12G116203 0.8 ENCODE dbSUPER 12 -54.5 -54489 0.1 CTCF PRDM6 GFI1B TEAD4 KDM1A MIR620 PIR52842 ENSG00000258337
GH12G116202 0.7 ENCODE dbSUPER 12 -53.5 -53457 0.2 PKNOX1 ZBTB17 MIR620 PIR52842 ENSG00000258337
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR620 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR620 Gene

116,148,560 bp from pter
116,148,654 bp from pter
95 bases
Minus strand

Genomic View for MIR620 Gene

Genes around MIR620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR620 Gene

ORGUL Member Location for MIR620 Gene

ORGUL Member Location for MIR620 gene

Proteins for MIR620 Gene

Post-translational modifications for MIR620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR620 Gene

Domains & Families for MIR620 Gene

Gene Families for MIR620 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR620: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR620 Gene

Function for MIR620 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR620 Gene

Localization for MIR620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR620 Gene

Pathways & Interactions for MIR620 Gene

SuperPathways for MIR620 Gene

No Data Available

Interacting Proteins for MIR620 Gene

Gene Ontology (GO) - Biological Process for MIR620 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR620 Gene

Drugs & Compounds for MIR620 Gene

No Compound Related Data Available

Transcripts for MIR620 Gene

fRNAdb Secondary structures for MIR620 Gene

  • FR238828

mRNA/cDNA for MIR620 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR620 Gene

No ASD Table

Relevant External Links for MIR620 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR620 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR620 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR620 Gene:

genes like me logo Genes that share expression patterns with MIR620: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR620 Gene

Orthologs for MIR620 Gene

Evolution for MIR620 Gene

Gene Tree for MIR620 (if available)
Gene Tree for MIR620 (if available)

No data available for Orthologs for MIR620 Gene

Paralogs for MIR620 Gene

No data available for Paralogs for MIR620 Gene

Variants for MIR620 Gene

Sequence variations from dbSNP and Humsavar for MIR620 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1002942589 -- 116,148,129(+) TTTGG(C/T)ATTAA intron-variant, downstream-variant-500B
rs1003719367 -- 116,149,806(+) GGACA(C/T)TAAGT intron-variant, upstream-variant-2KB
rs1005059505 -- 116,148,262(+) CAACC(A/G)TCTCC intron-variant, downstream-variant-500B
rs1005379971 -- 116,150,020(+) CTCTG(A/G)AAGTG intron-variant, upstream-variant-2KB
rs1005459625 -- 116,148,607(+) GAGAT(A/G)TCTAT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR620 Gene

Variant ID Type Subtype PubMed ID
nsv832522 CNV loss 17160897
nsv952488 CNV duplication 24416366

Relevant External Links for MIR620 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR620 Gene

Disorders for MIR620 Gene

Relevant External Links for MIR620

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR620 Gene

Publications for MIR620 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 1 3 64
  2. GPC5, a tumor suppressor, is regulated by miR-620 in lung adenocarcinoma. (PMID: 24682381) Zhao Z. … Cheng L. (Mol Med Rep 2014) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR620 Gene

Sources for MIR620 Gene

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