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Aliases for MIR607 Gene

Subcategory (RNA class) for MIR607 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR607 Gene

  • MicroRNA 607 2 3 5
  • Hsa-Mir-607 3
  • MIRN607 3

External Ids for MIR607 Gene

Previous HGNC Symbols for MIR607 Gene

  • MIRN607

Previous GeneCards Identifiers for MIR607 Gene

  • GC10M098579

Summaries for MIR607 Gene

Entrez Gene Summary for MIR607 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR607 Gene

MIR607 (MicroRNA 607) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR607 Gene

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR607

Additional gene information for MIR607 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR607 Gene

Genomics for MIR607 Gene

Regulatory Elements for MIR607 Gene

Enhancers for MIR607 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H096747 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +80.4 80441 1 PKNOX1 TBL1XR1 BATF ATF7 ETV6 RUNX3 CREM IKZF2 SMARCA5 JUNB PIK3AP1 LCOR MIR607 MORN4 RPL13AP5 RNU6-1274P
GH10H096708 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +119.4 119423 2 HDGF MAX POLR2A IKZF1 NBN MLLT1 IKZF2 MYC LCOR PIK3AP1 RNU6-1274P MIR607 TM9SF3 GC10M096631
GH10H096654 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +172.1 172103 3 MAX CEBPG BATF THRB RAD21 YY1 POLR2A ZNF143 RUNX3 HLF PIK3AP1 LCOR RNU6-1274P MIR607 TM9SF3 GC10M096631
GH10H096699 1.4 Ensembl ENCODE dbSUPER 11.5 +126.8 126760 5 HDGF TBL1XR1 RB1 BMI1 BATF RUNX3 CREM IKZF2 SMAD5 JUNB RNU6-1274P MIR607 LCOR PIK3AP1 GC10M096631
GH10H096644 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +181.8 181788 4 MAX EBF1 BATF RAD21 RELA YY1 ZNF664 HNF4G RUNX3 IKZF2 PIK3AP1 LCOR MIR607 TM9SF3 GC10M096631
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR607 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR607 Gene

Chromosome:
10
Start:
96,828,669 bp from pter
End:
96,828,764 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for MIR607 Gene

Genes around MIR607 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR607 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR607 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR607 Gene

ORGUL Member Location for MIR607 Gene

ORGUL Member Location for MIR607 gene

Proteins for MIR607 Gene

Post-translational modifications for MIR607 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR607 Gene

Domains & Families for MIR607 Gene

Gene Families for MIR607 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR607: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR607 Gene

Function for MIR607 Gene

Phenotypes From GWAS Catalog for MIR607 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR607
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR607 Gene

Localization for MIR607 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR607 Gene

Pathways & Interactions for MIR607 Gene

SuperPathways for MIR607 Gene

No Data Available

Interacting Proteins for MIR607 Gene

Gene Ontology (GO) - Biological Process for MIR607 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR607 Gene

Drugs & Compounds for MIR607 Gene

No Compound Related Data Available

Transcripts for MIR607 Gene

fRNAdb Secondary structures for MIR607 Gene

  • FR380951

mRNA/cDNA for MIR607 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR607
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR607 Gene

No ASD Table

Relevant External Links for MIR607 Gene

GeneLoc Exon Structure for
MIR607
ECgene alternative splicing isoforms for
MIR607

Expression for MIR607 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR607 Gene:

MIR607
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR607 Gene

Orthologs for MIR607 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR607 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToOne
Species where no ortholog for MIR607 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR607 Gene

ENSEMBL:
Gene Tree for MIR607 (if available)
TreeFam:
Gene Tree for MIR607 (if available)

Paralogs for MIR607 Gene

No data available for Paralogs for MIR607 Gene

Variants for MIR607 Gene

Sequence variations from dbSNP and Humsavar for MIR607 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000103876 -- 96,830,510(+) TAGGA(G/T)TCTCT downstream-variant-500B, upstream-variant-2KB
rs1000967529 -- 96,828,460(+) GTGAG(C/T)CACCA downstream-variant-500B
rs1001015690 -- 96,829,455(+) ACCCT(A/G)TTAAC upstream-variant-2KB
rs1001508927 -- 96,829,212(+) GCAGA(C/G)TGGGC upstream-variant-2KB
rs1002514330 -- 96,829,109(+) GGCTC(A/G)GAGGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR607 Gene

Variant ID Type Subtype PubMed ID
esv3577638 CNV gain 25503493
nsv1053801 CNV gain 25217958
nsv1110852 OTHER inversion 24896259
nsv825532 CNV gain 20364138

Relevant External Links for MIR607 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR607

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR607 Gene

Disorders for MIR607 Gene

Relevant External Links for MIR607

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR607

No disorders were found for MIR607 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR607 Gene

Publications for MIR607 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 1 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR607 Gene

Sources for MIR607 Gene

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