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Aliases for MIR600 Gene

Subcategory (RNA class) for MIR600 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR600 Gene

  • MicroRNA 600 2 3
  • MIR600 Host Gene 5
  • Hsa-Mir-600 3
  • MIR600HG 5
  • MIRN600 3

External Ids for MIR600 Gene

Previous HGNC Symbols for MIR600 Gene

  • MIRN600

Previous GeneCards Identifiers for MIR600 Gene

  • GC09M124914
  • GC09M125873

Summaries for MIR600 Gene

Entrez Gene Summary for MIR600 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR600 Gene

MIR600 (MicroRNA 600) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR600 Gene

Genomics for MIR600 Gene

Regulatory Elements for MIR600 Gene

Enhancers for MIR600 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F123355 1.3 Ensembl ENCODE 10.8 -243.0 -243044 6.2 HDGF ATF1 CREB3L1 MLX ZFP64 ARID4B ZNF48 GLIS2 GATA2 KDM4B STRBP MIR601 DENND1A MIR600HG MIR600 CRB2 GC09P123401
GH09F123304 1.3 Ensembl ENCODE 10.7 -189.4 -189424 1.5 PKNOX1 ATF1 ARNT ZNF48 GLIS2 ELK1 GATA2 KLF7 KLF13 NCOA1 ZBTB26 ENSG00000261094 STRBP ZBTB6 MIR600 MIR600HG GC09M123300 LOC105376265
GH09F123048 1.2 FANTOM5 Ensembl ENCODE 10.4 +66.1 66070 2.2 GTF2F1 STAT1 MTA2 CEBPB JUNB FEZF1 NR3C1 TBX21 EP300 OSR2 MIR600 MIR600HG RABGAP1 LOC100422501 GPR21
GH09F123302 1.1 Ensembl ENCODE 10.7 -187.4 -187415 1.1 HDGF HDAC1 TBL1XR1 ZBTB40 NCOA1 ZEB2 ELF1 SMARCA4 GLIS1 ZNF341 STRBP MIR600 MIR600HG GC09M123300 LOC105376265
GH09F123173 1.1 Ensembl ENCODE 10.6 -59.8 -59815 4.2 TBP PKNOX1 MXI1 TBL1XR1 BMI1 RELA YY1 CBX5 POLR2A SCRT2 MIR600 MIR600HG STRBP RABGAP1 PIR44660 GC09M123162
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR600 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR600 Gene

Chromosome:
9
Start:
123,109,494 bp from pter
End:
123,115,477 bp from pter
Size:
5,984 bases
Orientation:
Minus strand

Genomic View for MIR600 Gene

Genes around MIR600 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR600 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR600 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR600 Gene

Proteins for MIR600 Gene

Post-translational modifications for MIR600 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR600 Gene

Domains & Families for MIR600 Gene

Gene Families for MIR600 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR600: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR600 Gene

Function for MIR600 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR600 Gene

Localization for MIR600 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR600 Gene

Pathways & Interactions for MIR600 Gene

SuperPathways for MIR600 Gene

No Data Available

Interacting Proteins for MIR600 Gene

Gene Ontology (GO) - Biological Process for MIR600 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR600 Gene

Transcripts for MIR600 Gene

mRNA/cDNA for MIR600 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR600 Gene

No ASD Table

Relevant External Links for MIR600 Gene

GeneLoc Exon Structure for
MIR600
ECgene alternative splicing isoforms for
MIR600

Expression for MIR600 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR600 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR600 Gene:

MIR600
genes like me logo Genes that share expression patterns with MIR600: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR600 Gene

Orthologs for MIR600 Gene

Evolution for MIR600 Gene

ENSEMBL:
Gene Tree for MIR600 (if available)
TreeFam:
Gene Tree for MIR600 (if available)

No data available for Orthologs for MIR600 Gene

Paralogs for MIR600 Gene

No data available for Paralogs for MIR600 Gene

Variants for MIR600 Gene

Sequence variations from dbSNP and Humsavar for MIR600 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs113213803 -- 123,111,420(+) GGAAA(A/G)GAAAA intron-variant, nc-transcript-variant, downstream-variant-500B
rs113813113 -- 123,111,445(+) AAAAG(C/T)GGCAG intron-variant, nc-transcript-variant, downstream-variant-500B
rs114357113 -- 123,112,750(+) CGAGA(A/G)GCCAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115679828 -- 123,113,166(+) ACTTA(A/C)AACCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs117031902 -- 123,112,745(+) GGAGA(C/T)GAGAG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR600 Gene

Variant ID Type Subtype PubMed ID
nsv831717 CNV gain 17160897

Relevant External Links for MIR600 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR600

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR600 Gene

Disorders for MIR600 Gene

Relevant External Links for MIR600

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR600

No disorders were found for MIR600 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR600 Gene

Publications for MIR600 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  2. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3 64

Products for MIR600 Gene

Sources for MIR600 Gene

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