Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR5707 Gene

Subcategory (RNA class) for MIR5707 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5707 Gene

  • MicroRNA 5707 2 3 5
  • Hsa-Mir-5707 3

External Ids for MIR5707 Gene

Previous GeneCards Identifiers for MIR5707 Gene

  • GC07U903207
  • GC07P158386

Summaries for MIR5707 Gene

Entrez Gene Summary for MIR5707 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5707 Gene

MIR5707 (MicroRNA 5707) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5707 Gene

Genomics for MIR5707 Gene

Regulatory Elements for MIR5707 Gene

Enhancers for MIR5707 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F158146 0.9 Ensembl 16.2 -443.5 -443548 2.5 ZNF493 ZNF133 INSM2 PLRG1 ZNF302 ZNF416 ZNF207 ZNF548 ZNF202 ZNF680 ENSG00000231515 MIR5707 LINC01022 PIR31585 PIR56136
GH07F158594 0.3 FANTOM5 0.8 +3.3 3322 0.4 CBX3 SUZ12 WRNIP1 YY1 CBX8 POLR2A GLIS1 GATA1 MYC WDR60 MIR5707 GC07M158623 THAP5P1
GH07F158589 0.9 ENCODE 0.8 -0.9 -928 2.0 MLX ARID4B DMAP1 ZNF48 ZNF207 SP5 MIER2 PPARG KAT8 MIER3 LOC105375611 LINC01022 MIR5707
GH07F158595 0.6 ENCODE 0.8 +3.6 3628 0.1 CBX3 RNF2 SUZ12 WRNIP1 YY1 CBX8 POLR2A EGR1 GATA1 MYC MIR5707 GC07M158623 THAP5P1
GH07F158613 0.6 ENCODE 0.3 +22.0 21988 0.2 PKNOX1 IRF1 TBX21 CREM LINC01022 PTPRN2 GC07M158623 THAP5P1 MIR5707
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR5707 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5707 Gene

Chromosome:
7
Start:
158,591,616 bp from pter
End:
158,591,696 bp from pter
Size:
81 bases
Orientation:
Plus strand

Genomic View for MIR5707 Gene

Genes around MIR5707 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5707 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5707 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5707 Gene

Proteins for MIR5707 Gene

Post-translational modifications for MIR5707 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5707 Gene

Domains & Families for MIR5707 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5707 Gene

Function for MIR5707 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5707 Gene

Localization for MIR5707 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5707 Gene

Pathways & Interactions for MIR5707 Gene

SuperPathways for MIR5707 Gene

No Data Available

Interacting Proteins for MIR5707 Gene

Gene Ontology (GO) - Biological Process for MIR5707 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5707 Gene

Transcripts for MIR5707 Gene

mRNA/cDNA for MIR5707 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5707 Gene

No ASD Table

Relevant External Links for MIR5707 Gene

GeneLoc Exon Structure for
MIR5707
ECgene alternative splicing isoforms for
MIR5707

Expression for MIR5707 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5707 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5707 Gene:

MIR5707
genes like me logo Genes that share expression patterns with MIR5707: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5707 Gene

Orthologs for MIR5707 Gene

Evolution for MIR5707 Gene

ENSEMBL:
Gene Tree for MIR5707 (if available)
TreeFam:
Gene Tree for MIR5707 (if available)

No data available for Orthologs for MIR5707 Gene

Paralogs for MIR5707 Gene

No data available for Paralogs for MIR5707 Gene

Variants for MIR5707 Gene

Sequence variations from dbSNP and Humsavar for MIR5707 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10277152 -- 158,591,898(+) TATTC(C/T)TTGAT nc-transcript-variant, downstream-variant-500B
rs111204909 -- 158,589,914(+) CTCTC(C/T)CTCTC upstream-variant-2KB
rs111961876 -- 158,590,749(+) CTTGG(C/T)GTGAA nc-transcript-variant, upstream-variant-2KB
rs112230494 -- 158,591,753(+) CCTTC(C/T)TACTT nc-transcript-variant, downstream-variant-500B
rs113781404 -- 158,590,860(+) TGCTG(A/C)TTGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5707 Gene

Variant ID Type Subtype PubMed ID
esv2764036 CNV gain+loss 21179565
esv3615729 CNV gain 21293372
nsv1020518 CNV gain 25217958
nsv1023304 CNV gain 25217958
nsv1029709 CNV gain 25217958
nsv509237 CNV insertion 20534489
nsv510974 OTHER complex 20534489

Relevant External Links for MIR5707 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5707

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5707 Gene

Disorders for MIR5707 Gene

Relevant External Links for MIR5707

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5707

No disorders were found for MIR5707 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5707 Gene

Publications for MIR5707 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5707 Gene

Sources for MIR5707 Gene

Content
Loading form....