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Aliases for MIR5700 Gene

Subcategory (RNA class) for MIR5700 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5700 Gene

  • MicroRNA 5700 2 3 5
  • Hsa-Mir-5700 3

External Ids for MIR5700 Gene

Previous GeneCards Identifiers for MIR5700 Gene

  • GC12U901633
  • GC12P094957

Summaries for MIR5700 Gene

Entrez Gene Summary for MIR5700 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5700 Gene

MIR5700 (MicroRNA 5700) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5700 Gene

Genomics for MIR5700 Gene

Regulatory Elements for MIR5700 Gene

Enhancers for MIR5700 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G094560 1.6 FANTOM5 Ensembl ENCODE 0.7 +0.4 426 3.8 ATF1 PKNOX1 ARNT CREB3L1 FEZF1 YY1 TCF12 GLIS2 ELK1 FOS TMCC3 MIR5700 MIR7844
GH12G094557 0.6 ENCODE 0.7 -3.5 -3497 1.3 CTCF RFX1 ZNF692 GATA2 IKZF1 SCRT2 RELB FOXJ2 IKZF2 MIR5700 SUCLG2P2
GH12G094569 0.9 ENCODE 0.4 +9.3 9260 2.3 FOXA2 MLX ARID4B RAD21 RARA YY1 GATA2 SCRT2 FOS MIXL1 TMCC3 MIR7844 MIR5700
GH12G094564 0.4 ENCODE 0.7 +3.6 3624 1.0 ZSCAN29 TMCC3 MIR5700 MIR7844
GH12G094552 0.6 ENCODE 0.4 -8.7 -8677 1.7 GTF3C2 ZNF362 JUND JUN CEBPB FOS EP300 TCF7L2 TMCC3 SUCLG2P2 MIR5700
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5700 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5700 Gene

Chromosome:
12
Start:
94,561,789 bp from pter
End:
94,561,859 bp from pter
Size:
71 bases
Orientation:
Plus strand

Genomic View for MIR5700 Gene

Genes around MIR5700 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5700 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5700 Gene

Proteins for MIR5700 Gene

Post-translational modifications for MIR5700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5700 Gene

Domains & Families for MIR5700 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5700 Gene

Function for MIR5700 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5700 Gene

Localization for MIR5700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5700 Gene

Pathways & Interactions for MIR5700 Gene

SuperPathways for MIR5700 Gene

No Data Available

Interacting Proteins for MIR5700 Gene

Gene Ontology (GO) - Biological Process for MIR5700 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5700 Gene

Drugs & Compounds for MIR5700 Gene

No Compound Related Data Available

Transcripts for MIR5700 Gene

mRNA/cDNA for MIR5700 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5700 Gene

No ASD Table

Relevant External Links for MIR5700 Gene

GeneLoc Exon Structure for
MIR5700
ECgene alternative splicing isoforms for
MIR5700

Expression for MIR5700 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5700 Gene:

MIR5700
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5700 Gene

Orthologs for MIR5700 Gene

Evolution for MIR5700 Gene

ENSEMBL:
Gene Tree for MIR5700 (if available)
TreeFam:
Gene Tree for MIR5700 (if available)

No data available for Orthologs for MIR5700 Gene

Paralogs for MIR5700 Gene

No data available for Paralogs for MIR5700 Gene

Variants for MIR5700 Gene

Sequence variations from dbSNP and Humsavar for MIR5700 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1002696740 -- 94,560,548(+) GAAGG(A/G)ATAGT upstream-variant-2KB
rs1003392998 -- 94,561,209(+) TGCCG(A/C)GTCTC upstream-variant-2KB
rs1007136769 -- 94,560,395(+) TGCAC(A/C)AGAAG upstream-variant-2KB
rs1007141552 -- 94,561,632(+) TAGCC(A/G)GGCAT upstream-variant-2KB
rs1007555873 -- 94,561,235(+) TTTCT(A/G)CTTTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5700 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Relevant External Links for MIR5700 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5700

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5700 Gene

Disorders for MIR5700 Gene

Relevant External Links for MIR5700

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5700

No disorders were found for MIR5700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5700 Gene

Publications for MIR5700 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5700 Gene

Sources for MIR5700 Gene

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