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Aliases for MIR5699 Gene

Subcategory (RNA class) for MIR5699 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5699 Gene

  • MicroRNA 5699 2 3 5
  • Hsa-Mir-5699 3
  • Mir-5699 3

External Ids for MIR5699 Gene

Previous GeneCards Identifiers for MIR5699 Gene

  • GC10U901564

Summaries for MIR5699 Gene

Entrez Gene Summary for MIR5699 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5699 Gene

MIR5699 (MicroRNA 5699) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5699 Gene

Genomics for MIR5699 Gene

Regulatory Elements for MIR5699 Gene

Enhancers for MIR5699 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F000642 0.5 ENCODE 0.8 -0.6 -618 0.2 KLF1 KLF4 ZNF652 PRDM1 MIR5699 PRR26
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5699 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5699 Gene

Chromosome:
10
Start:
641,689 bp from pter
End:
641,778 bp from pter
Size:
90 bases
Orientation:
Minus strand

Genomic View for MIR5699 Gene

Genes around MIR5699 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5699 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5699 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5699 Gene

Proteins for MIR5699 Gene

Post-translational modifications for MIR5699 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5699 Gene

Domains & Families for MIR5699 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5699 Gene

Function for MIR5699 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5699 Gene

Localization for MIR5699 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5699 Gene

Pathways & Interactions for MIR5699 Gene

SuperPathways for MIR5699 Gene

No Data Available

Interacting Proteins for MIR5699 Gene

Gene Ontology (GO) - Biological Process for MIR5699 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5699 Gene

Transcripts for MIR5699 Gene

mRNA/cDNA for MIR5699 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5699 Gene

No ASD Table

Relevant External Links for MIR5699 Gene

GeneLoc Exon Structure for
MIR5699
ECgene alternative splicing isoforms for
MIR5699

Expression for MIR5699 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5699 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5699 Gene:

MIR5699
genes like me logo Genes that share expression patterns with MIR5699: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5699 Gene

Orthologs for MIR5699 Gene

Evolution for MIR5699 Gene

ENSEMBL:
Gene Tree for MIR5699 (if available)
TreeFam:
Gene Tree for MIR5699 (if available)

No data available for Orthologs for MIR5699 Gene

Paralogs for MIR5699 Gene

No data available for Paralogs for MIR5699 Gene

Variants for MIR5699 Gene

Sequence variations from dbSNP and Humsavar for MIR5699 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10795292 -- 642,484(+) AGGTG(C/T)CTATT intron-variant, upstream-variant-2KB
rs113798138 -- 642,992(+) TGAGG(C/T)CAACA intron-variant, upstream-variant-2KB
rs11417788 -- 641,858(+) TCTAC(-/A)AAAAA intron-variant, upstream-variant-2KB
rs116661142 -- 641,516(+) CCCTC(C/T)TCTCC intron-variant, downstream-variant-500B
rs117030093 -- 641,445(+) CCTTA(C/G)ATCCC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR5699 Gene

Variant ID Type Subtype PubMed ID
nsv549764 CNV loss 21841781
nsv549753 CNV gain 21841781
nsv549751 CNV gain 21841781
nsv528733 CNV gain 19592680
esv2660097 CNV deletion 23128226
dgv651n100 CNV gain 25217958
dgv118n67 CNV gain 20364138

Relevant External Links for MIR5699 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5699

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5699 Gene

Disorders for MIR5699 Gene

Relevant External Links for MIR5699

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5699

No disorders were found for MIR5699 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5699 Gene

Publications for MIR5699 Gene

  1. Birth and expression evolution of mammalian microRNA genes. (PMID: 23034410) Meunier J. … Kaessmann H. (Genome Res. 2013) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5699 Gene

Sources for MIR5699 Gene

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