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Aliases for MIR5696 Gene

Subcategory (RNA class) for MIR5696 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5696 Gene

  • MicroRNA 5696 2 3 5
  • Hsa-Mir-5696 3

External Ids for MIR5696 Gene

Previous GeneCards Identifiers for MIR5696 Gene

  • GC02U902490
  • GC02P101927

Summaries for MIR5696 Gene

Entrez Gene Summary for MIR5696 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5696 Gene

MIR5696 (MicroRNA 5696) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5696 Gene

Genomics for MIR5696 Gene

Regulatory Elements for MIR5696 Gene

Enhancers for MIR5696 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F101327 1.2 FANTOM5 Ensembl ENCODE 0.3 +20.1 20051 5.0 PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 ZNF48 ZNF207 FOS ZHX2 RNF149 CREG2 SNORD89 MAP4K4 MIR5696 ENSG00000226058
GH02F101332 0.2 Ensembl 0.3 +23.5 23452 1.0 SOX13 ELF3 DRAP1 ZNF792 SAP130 ARID4B CEBPG THRB TEAD3 GATA4 CREG2 MIR5696 ENSG00000226058
GH02F101339 0.9 Ensembl ENCODE 0.3 +31.8 31771 2.8 ELF3 PKNOX1 ARID4B ZNF2 RAD21 RFX5 YY1 ZNF143 RCOR1 DEK CREG2 SNORD89 MIR5696 ENSG00000226058
GH02F101348 1.1 Ensembl ENCODE 0.2 +40.5 40529 2.7 SOX13 GATAD2A SOX5 CTCF STAT1 SAP130 HLF CEBPB CEBPG HMG20A CREG2 SNORD89 ENSG00000223947 ENSG00000226058 MIR5696
GH02F101355 1.5 FANTOM5 Ensembl ENCODE 0.2 +47.0 46950 2.4 TBP PKNOX1 JUN BHLHE40 CEBPB EP300 ZNF83 ZNF217 JUND GATA3 SNORD89 CREG2 ENSG00000226058 MIR5696
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR5696 on UCSC Golden Path with GeneCards custom track

Promoters for MIR5696 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000595421 -1850 3601 HDGF CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 FOS

Genomic Location for MIR5696 Gene

Chromosome:
2
Start:
101,309,450 bp from pter
End:
101,309,534 bp from pter
Size:
85 bases
Orientation:
Plus strand

Genomic View for MIR5696 Gene

Genes around MIR5696 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5696 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5696 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5696 Gene

Proteins for MIR5696 Gene

Post-translational modifications for MIR5696 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5696 Gene

Domains & Families for MIR5696 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5696 Gene

Function for MIR5696 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5696 Gene

Localization for MIR5696 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5696 Gene

Pathways & Interactions for MIR5696 Gene

SuperPathways for MIR5696 Gene

No Data Available

Interacting Proteins for MIR5696 Gene

Gene Ontology (GO) - Biological Process for MIR5696 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5696 Gene

Transcripts for MIR5696 Gene

mRNA/cDNA for MIR5696 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5696 Gene

No ASD Table

Relevant External Links for MIR5696 Gene

GeneLoc Exon Structure for
MIR5696
ECgene alternative splicing isoforms for
MIR5696

Expression for MIR5696 Gene

mRNA expression in normal human tissues for MIR5696 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5696 Gene:

MIR5696
genes like me logo Genes that share expression patterns with MIR5696: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5696 Gene

Orthologs for MIR5696 Gene

Evolution for MIR5696 Gene

ENSEMBL:
Gene Tree for MIR5696 (if available)
TreeFam:
Gene Tree for MIR5696 (if available)

No data available for Orthologs for MIR5696 Gene

Paralogs for MIR5696 Gene

No data available for Paralogs for MIR5696 Gene

Variants for MIR5696 Gene

Sequence variations from dbSNP and Humsavar for MIR5696 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10706805 -- 101,309,276(+) TTGTG(-/A)AAAAA intron-variant, upstream-variant-2KB
rs11123868 -- 101,308,564(-) AAGCC(A/G)GCGTC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs111649241 -- 101,307,913(+) AAAGG(C/G)GAAGA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs113548092 -- 101,308,832(+) TCCCG(A/G)GATCT nc-transcript-variant, upstream-variant-2KB
rs113706752 -- 101,308,869(+) GCGCA(G/T)CCTGT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5696 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV loss 18971310
esv3892993 CNV gain 25118596

Relevant External Links for MIR5696 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5696

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5696 Gene

Disorders for MIR5696 Gene

Relevant External Links for MIR5696

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5696

No disorders were found for MIR5696 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5696 Gene

Publications for MIR5696 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5696 Gene

Sources for MIR5696 Gene

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