Aliases for MIR5692B Gene
Subcategory (RNA class) for MIR5692B Gene
miRNA
Quality Score for this RNA gene is
3
External Ids for MIR5692B Gene
- HGNC: 43535
- Entrez Gene: 100847013
- Ensembl: ENSG00000264580
ORGUL Members for MIR5692B Gene
Previous GeneCards Identifiers for MIR5692B Gene
- GC21U900451
- GC21M044373
Summaries for MIR5692B Gene
-
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
GeneCards Summary for MIR5692B Gene
MIR5692B (MicroRNA 5692b) is an RNA Gene, and is affiliated with the miRNA class.
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5692B Gene
Genomics for MIR5692B Gene
Regulatory Elements for MIR5692B Gene
Enhancers for MIR5692B Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH21G042935 | 1.5 | FANTOM5 Ensembl ENCODE | 0.4 | +11.9 | 11916 | 7.4 | ZFP64 TCF12 ZNF766 ZNF143 FOS ZNF263 CAVIN1 TBX21 ZNF592 MEF2D | NDUFV3 PKNOX1 ENSG00000224100 FRGCA WDR4 CBS PDXK MIR5692B ERVH48-1 |
| GH21G042923 | 1.4 | Ensembl ENCODE | 0.3 | +22.0 | 21987 | 11.9 | HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 ZBTB7B ZNF766 ZNF207 ZNF143 | U2AF1 NDUFV3 WDR4 ENSG00000233754 ENSG00000224100 PKNOX1 FRGCA ERVH48-1 MIR5692B |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around MIR5692B on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for MIR5692B Gene
- Chromosome:
- 21
- Start:
- 42,950,928 bp from pter
- End:
- 42,951,014 bp from pter
- Size:
- 87 bases
- Orientation:
- Minus strand
Genomic View for MIR5692B Gene
Genes around MIR5692B on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.3 by Ensembl
- 21q22.3 by Entrez Gene
- 21q22.3 by HGNC
MIR5692B Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MIR5692B Gene
Proteins for MIR5692B Gene
Post-translational modifications for MIR5692B Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for MIR5692B
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR5692B
- Origene Custom Protein Services for MIR5692B
- Search GeneTex for Proteins for MIR5692B
Assay Products
No data available for DME Specific Peptides for MIR5692B Gene
Domains & Families for MIR5692B Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5692B Gene
Function for MIR5692B Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for MIR5692B
CRISPR Products
- Browse CRISPR knockouts for MIR5692B
miRNA Products
- Search ViGene Biosciences for MIR5692B
Inhibitory RNA Products
- Search ViGene Biosciences for MIR5692B
Cell Line Products
- Search ViGene Biosciences for MIR5692B
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5692B Gene
Localization for MIR5692B Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5692B Gene
Transcripts for MIR5692B Gene
mRNA/cDNA for MIR5692B Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for MIR5692B
miRNA Products
- Search ViGene Biosciences for MIR5692B
Inhibitory RNA Products
- Search ViGene Biosciences for MIR5692B
Flow Cytometry Products
Expression for MIR5692B Gene
NURSA nuclear receptor signaling pathways regulating expression of MIR5692B Gene:
MIR5692B
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5692B Gene
Orthologs for MIR5692B Gene
No data available for Orthologs for MIR5692B Gene
Paralogs for MIR5692B Gene
No data available for Paralogs for MIR5692B Gene
Variants for MIR5692B Gene
| SNP ID | Clin | Chr 21 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1002419638 | -- | 42,950,782(+) | ATATC(A/C)CATGG | downstream-variant-500B | |
| rs1002685970 | -- | 42,950,533(+) | ATCCC(A/C)GTGAG | downstream-variant-500B | |
| rs1004316923 | -- | 42,950,969(+) | ATGGT(A/G)TACAC | nc-transcript-variant | |
| rs1004647136 | -- | 42,950,820(+) | TATCA(C/T)ACTCC | downstream-variant-500B | |
| rs1005621413 | -- | 42,952,117(+) | TAGCG(G/T)GATAT | upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv2396n106 | CNV | duplication | 24896259 |
| esv2666871 | CNV | deletion | 23128226 |
| esv3568210 | CNV | loss | 25503493 |
| esv3584478 | CNV | gain | 24956385 |
| esv3647096 | CNV | loss | 21293372 |
| nsv1077923 | CNV | duplication | 25765185 |
| nsv1147447 | CNV | duplication | 26484159 |
| nsv587657 | CNV | gain | 21841781 |
| nsv834105 | CNV | loss | 17160897 |
Relevant External Links for MIR5692B Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- MIR5692B
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5692B Gene
Disorders for MIR5692B Gene
Relevant External Links for MIR5692B
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- MIR5692B
No disorders were found for MIR5692B Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5692B Gene
Publications for MIR5692B Gene
- MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
- miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
Products for MIR5692B Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR5692B
- Origene Custom Protein Services for MIR5692B
- Browse OriGene Inhibitory RNA Products For MIR5692B
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for MIR5692B
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For MIR5692B
- GenScript: Custom all cDNA clones Services for MIR5692B
- GenScript Custom Purified and Recombinant Proteins Services for MIR5692B
- GenScript Custom Assay Services for MIR5692B
- GenScript Custom overexpressing Cell Line Services for MIR5692B
- Browse GenScript CRISPR for MIR5692B
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for MIR5692B
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR5692B
- VectorBuilder custom plasmid, inducible vectors for MIR5692B
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR5692B
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for MIR5692B Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer