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MIR5692B Gene(RNA Gene)

MicroRNA 5692b

GCID:
GC21M042950
GIFtS:
12
Genes Participants
UDN Logo

Aliases for MIR5692B Gene

Subcategory (RNA class) for MIR5692B Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5692B Gene

  • MicroRNA 5692b 2 3 5
  • Hsa-Mir-5692b 3

External Ids for MIR5692B Gene

ORGUL Members for MIR5692B Gene

Previous GeneCards Identifiers for MIR5692B Gene

  • GC21U900451
  • GC21M044373

Summaries for MIR5692B Gene

Entrez Gene Summary for MIR5692B Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5692B Gene

MIR5692B (MicroRNA 5692b) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5692B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5692B Gene

Genomics for MIR5692B Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MIR5692B Gene

Promoters and enhancers for MIR5692B Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21I042935 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +11.9 11915 7.4 ZFP64 TCF12 ZNF766 ZNF143 FOS ATF7 RXRA CAVIN1 ZNF592 MEF2D NDUFV3 PKNOX1 ENSG00000224100 FRGCA WDR4 CBS PDXK ERVH48-1 MIR5692B
GH21I042923 Enhancer 1.3 Ensembl ENCODE 0.3 +22.0 21986 11.9 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A ZNF2 ZBTB7B POLR2B ZNF766 U2AF1 WDR4 ENSG00000233754 RRP1B NDUFV3 SIK1 ENSG00000224100 PKNOX1 FRGCA UBASH3A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5692B on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5692B Gene

Genomic Locations for MIR5692B Gene
chr21:42,950,928-42,951,014
(GRCh38/hg38)
Size:
87 bases
Orientation:
Minus strand
chr21:44,371,038-44,371,124
(GRCh37/hg19)

Genomic View for MIR5692B Gene

Genes around MIR5692B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5692B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5692B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR5692B Gene

Proteins for MIR5692B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR5692B Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5692B Gene

Domains & Families for MIR5692B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5692B Gene

Function for MIR5692B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5692B Gene

Localization for MIR5692B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5692B Gene

Pathways & Interactions for MIR5692B Gene

SuperPathways for MIR5692B Gene

PathCards logo More details on SuperPathways for MIR5692B
No Data Available

Interacting Proteins for MIR5692B Gene

Gene Ontology (GO) - Biological Process for MIR5692B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5692B Gene

Drugs & Compounds for MIR5692B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR5692B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR5692B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5692B Gene

No ASD Table

Relevant External Links for MIR5692B Gene

GeneLoc Exon Structure for
MIR5692B
ECgene alternative splicing isoforms for
MIR5692B

Expression for MIR5692B Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5692B Gene

mRNA expression in normal human tissues for MIR5692B Gene
mRNA expression by GTEx for MIR5692B Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5692B Gene:

MIR5692B
genes like me logo Genes that share expression patterns with MIR5692B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5692B Gene

Orthologs for MIR5692B Gene

Evolution for MIR5692B Gene

ENSEMBL:
Gene Tree for MIR5692B (if available)
TreeFam:
Gene Tree for MIR5692B (if available)

No data available for Orthologs for MIR5692B Gene

Paralogs for MIR5692B Gene

No data available for Paralogs for MIR5692B Gene

Variants for MIR5692B Gene

Sequence variations from dbSNP and Humsavar for MIR5692B Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1002419638 -- 42,950,782(-) A/C downstream_transcript_variant
rs1002685970 -- 42,950,533(-) A/C downstream_transcript_variant
rs1004316923 -- 42,950,969(-) G/A non_coding_transcript_variant
rs1004647136 -- 42,950,820(-) C/T downstream_transcript_variant
rs1005621413 -- 42,952,117(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5692B Gene

Variant ID Type Subtype PubMed ID
dgv2396n106 CNV duplication 24896259
esv2666871 CNV deletion 23128226
esv3568210 CNV loss 25503493
esv3584478 CNV gain 24956385
esv3647096 CNV loss 21293372
nsv1077923 CNV duplication 25765185
nsv1147447 CNV duplication 26484159
nsv587657 CNV gain 21841781
nsv834105 CNV loss 17160897

Additional Variant Information for MIR5692B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5692B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5692B Gene

Disorders for MIR5692B Gene

Additional Disease Information for MIR5692B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR5692B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5692B Gene

Publications for MIR5692B Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5692B Gene

Sources for MIR5692B Gene

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