Aliases for MIR5692B Gene
Subcategory (RNA class) for MIR5692B Gene
miRNA
Quality Score for this RNA gene is
3
External Ids for MIR5692B Gene
- HGNC: 43535
- Entrez Gene: 100847013
- Ensembl: ENSG00000264580
ORGUL Members for MIR5692B Gene
Previous GeneCards Identifiers for MIR5692B Gene
- GC21U900451
- GC21M044373
Summaries for MIR5692B Gene
-
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
GeneCards Summary for MIR5692B Gene
MIR5692B (MicroRNA 5692b) is an RNA Gene, and is affiliated with the miRNA class.
No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5692B Gene
Genomics for MIR5692B Gene
Regulatory Elements for MIR5692B Gene
Enhancers for MIR5692B Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH21F042949 | 0.8 | Ensembl | 0.8 | +1.4 | 1414 | 0.4 | INSM2 ZIC2 BCL11B ZFHX2 ZNF547 KLF7 THAP11 EGR2 GATAD2A ZBTB10 | PKNOX1 CBS U2AF1 MIR5692B ERVH48-1 |
| GH21F042935 | 1.5 | FANTOM5 Ensembl ENCODE | 0.4 | +11.9 | 11916 | 7.4 | ZFP64 ZNF143 FOS ZNF263 TBX21 ZNF592 CREB3 MEF2D SMARCA4 PBX2 | NDUFV3 PKNOX1 ENSG00000224100 FRGCA WDR4 CBS PDXK ERVH48-1 MIR5692B |
| GH21F042923 | 1.4 | Ensembl ENCODE | 0.3 | +22.0 | 21987 | 11.9 | HDGF PKNOX1 ARNT ARID4B ZNF2 ZNF143 ZNF207 MCM3 SP3 MCM5 | U2AF1 WDR4 NDUFV3 ENSG00000233754 ENSG00000224100 PKNOX1 FRGCA ERVH48-1 MIR5692B |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around MIR5692B on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for MIR5692B Gene
- Chromosome:
- 21
- Start:
- 42,950,928 bp from pter
- End:
- 42,951,014 bp from pter
- Size:
- 87 bases
- Orientation:
- Minus strand
Genomic View for MIR5692B Gene
Genes around MIR5692B on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 21q22.3 by Ensembl
- 21q22.3 by Entrez Gene
- 21q22.3 by HGNC
MIR5692B Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MIR5692B Gene
Proteins for MIR5692B Gene
Post-translational modifications for MIR5692B Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for MIR5692B
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR5692B
- Origene Custom Protein Services for MIR5692B
- Search GeneTex for Proteins for MIR5692B
Assay Products
No data available for DME Specific Peptides for MIR5692B Gene
Domains & Families for MIR5692B Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5692B Gene
Function for MIR5692B Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR5692B
-
- Search ViGene Biosciences for MIR5692B
CRISPR Products
- Browse CRISPR knockouts for MIR5692B
Inhibitory RNA Products
- Search ViGene Biosciences for MIR5692B
Clone Products
- GenScript: Custom all cDNA clones Services for MIR5692B
- VectorBuilder custom plasmid, inducible vectors for MIR5692B
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR5692B
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for MIR5692B
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5692B Gene
Localization for MIR5692B Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5692B Gene
Transcripts for MIR5692B Gene
mRNA/cDNA for MIR5692B Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for MIR5692B
Inhibitory RNA Products
- Search ViGene Biosciences for MIR5692B
Clone Products
- GenScript: Custom all cDNA clones Services for MIR5692B
- VectorBuilder custom plasmid, inducible vectors for MIR5692B
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR5692B
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for MIR5692B Gene
NURSA nuclear receptor signaling pathways regulating expression of MIR5692B Gene:
MIR5692B
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5692B Gene
Orthologs for MIR5692B Gene
No data available for Orthologs for MIR5692B Gene
Paralogs for MIR5692B Gene
No data available for Paralogs for MIR5692B Gene
Variants for MIR5692B Gene
| SNP ID | Clin | Chr 21 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs111543380 | -- | 42,950,912(+) | GATTA(C/T)TCATA | downstream-variant-500B | |
| rs111819641 | -- | 42,952,862(+) | TTAAT(A/T)TCACA | upstream-variant-2KB | |
| rs112713883 | -- | 42,952,876(+) | GGTGT(A/T)CACCA | upstream-variant-2KB | |
| rs112952483 | -- | 42,951,228(+) | GAAGT(C/T)ACAAT | upstream-variant-2KB | |
| rs112965298 | -- | 42,950,517(+) | AGATA(G/T)TCCTT | downstream-variant-500B |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv834105 | CNV | loss | 17160897 |
| nsv587657 | CNV | gain | 21841781 |
| nsv1147447 | CNV | duplication | 26484159 |
| nsv1077923 | CNV | duplication | 25765185 |
| esv3647096 | CNV | loss | 21293372 |
| esv3584478 | CNV | gain | 24956385 |
| esv3568210 | CNV | loss | 25503493 |
| esv2666871 | CNV | deletion | 23128226 |
| dgv2396n106 | CNV | duplication | 24896259 |
Relevant External Links for MIR5692B Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- MIR5692B
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5692B Gene
Disorders for MIR5692B Gene
Relevant External Links for MIR5692B
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- MIR5692B
No disorders were found for MIR5692B Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5692B Gene
Publications for MIR5692B Gene
- MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
- miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
Products for MIR5692B Gene
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- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Browse cDNA Clones
- Browse Cell Culture Products
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- Browse Immunoprecipitation Assays
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- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search ViGene Biosciences for MIR5692B
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR5692B
- VectorBuilder custom plasmid, inducible vectors for MIR5692B
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR5692B
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for MIR5692B Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
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- (120) RVIS
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- (122) diseasecard
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- (128) Genetics Home Reference
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- (136) ViGene Biosciences
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- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab