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MIR569 Gene(RNA Gene)

MicroRNA 569

GCID:
GC03M171106
GIFtS:
16
Genes Participants
UDN Logo

Aliases for MIR569 Gene

Subcategory (RNA class) for MIR569 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR569 Gene

  • MicroRNA 569 2 3 5
  • Hsa-Mir-569 3
  • MIRN569 3

External Ids for MIR569 Gene

ORGUL Members for MIR569 Gene

Previous HGNC Symbols for MIR569 Gene

  • MIRN569

Previous GeneCards Identifiers for MIR569 Gene

  • GC03M172308
  • GC03M170824

Summaries for MIR569 Gene

Entrez Gene Summary for MIR569 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR569 Gene

MIR569 (MicroRNA 569) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR569 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR569

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR569 Gene

Genomics for MIR569 Gene

Products:

  1. Regulatory Element

Regulatory Elements for MIR569 Gene

Enhancers for MIR569 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MIR569 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR569 Gene

Chromosome:
3
Start:
171,106,664 bp from pter
End:
171,106,759 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for MIR569 Gene

Genes around MIR569 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR569 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR569 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR569 Gene

ORGUL Member Location for MIR569 Gene

ORGUL Member Location for MIR569 gene

Proteins for MIR569 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR569 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR569 Gene

Domains & Families for MIR569 Gene

Gene Families for MIR569 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR569: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR569 Gene

Function for MIR569 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR569 Gene

Localization for MIR569 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR569 Gene

Pathways & Interactions for MIR569 Gene

SuperPathways for MIR569 Gene

PathCards logoMore details on SuperPathways for MIR569
No Data Available

Interacting Proteins for MIR569 Gene

Gene Ontology (GO) - Biological Process for MIR569 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR569 Gene

Drugs & Compounds for MIR569 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR569 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

fRNAdb Secondary structures for MIR569 Gene

  • hsa-mir-569_MI0003576_Homo_sapiens_miR-569_stem-loop_hairpin

mRNA/cDNA for MIR569 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR569 Gene

No ASD Table

Relevant External Links for MIR569 Gene

GeneLoc Exon Structure for
MIR569
ECgene alternative splicing isoforms for
MIR569

Expression for MIR569 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for MIR569 Gene

mRNA expression in normal human tissues for MIR569 Gene
mRNA expression by GTEx for MIR569 Gene
genes like me logo Genes that share expression patterns with MIR569: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR569 Gene

Orthologs for MIR569 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR569 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia ptr-mir-569 36
  • 99 (a)
 OneToOne
Species with no ortholog for MIR569:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR569 Gene

ENSEMBL:
Gene Tree for MIR569 (if available)
TreeFam:
Gene Tree for MIR569 (if available)

Paralogs for MIR569 Gene

No data available for Paralogs for MIR569 Gene

Variants for MIR569 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR569 Gene

Variant ID Type Subtype PubMed ID
nsv7356 OTHER Inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for MIR569 Gene

Disorders for MIR569 Gene

Relevant External Links for MIR569

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR569

No disorders were found for MIR569 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR569 Gene

Publications for MIR569 Gene

  1. Copy number gain of hsa-miR-569 at 3q26.2 leads to loss of TP53INP1 and aggressiveness of epithelial cancers. (PMID: 25490449) Chaluvally-Raghavan P. … Mills G.B. (Cancer Cell 2014) 3 67
  2. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 1 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3

Products for MIR569 Gene

Sources for MIR569 Gene

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