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Aliases for MIR5687 Gene

Subcategory (RNA class) for MIR5687 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5687 Gene

  • MicroRNA 5687 2 3 5
  • Hsa-Mir-5687 3

External Ids for MIR5687 Gene

Previous GeneCards Identifiers for MIR5687 Gene

  • GC05U901585
  • GC05M054806

Summaries for MIR5687 Gene

Entrez Gene Summary for MIR5687 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5687 Gene

MIR5687 (MicroRNA 5687) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5687 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5687 Gene

Genomics for MIR5687 Gene

GeneHancer (GH) Regulatory Elements for MIR5687 Gene

Promoters and enhancers for MIR5687 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I055508 Enhancer 0.7 ENCODE dbSUPER 550.8 -1.0 -1044 2.6 OSR2 SCRT1 CTCF RXRA HNF4A PRDM1 NR2F2 MIR5687 RNF138P1 PLPP1
GH05I055516 Enhancer 0.9 ENCODE dbSUPER 0.4 -11.3 -11312 6.8 KLF1 KLF17 ZNF2 ZNF664 CTBP1 GATA3 PATZ1 SCRT2 NFE2 KLF7 CCNO RNF138P1 MIR5687 PLPP1 GC05M055517
GH05I055494 Enhancer 0.6 ENCODE dbSUPER 0.4 +14.1 14067 0.9 CTCF HNF4A RAD21 RNF138P1 PLPP1 MIR5687 ENSG00000279883
GH05I055483 Enhancer 0.7 ENCODE dbSUPER 0.3 +24.2 24220 1.6 USF1 RXRA MAX POU5F1 BACH1 ZNF644 ENSG00000279883 RNF138P1 MIR5687 PLPP1
GH05I055497 Enhancer 0.5 dbSUPER 0.4 +10.8 10779 1.7 GATA3 FOXA2 HLF PRDM10 HNF4A BCL6 ZIC2 RNF138P1 PLPP1 MTREX DHX29 CCNO MIR5687 ENSG00000279883
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5687 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5687 Gene

Genomic Locations for MIR5687 Gene
chr5:55,508,850-55,508,926
(GRCh38/hg38)
Size:
77 bases
Orientation:
Minus strand
chr5:54,804,678-54,804,754
(GRCh37/hg19)

Genomic View for MIR5687 Gene

Genes around MIR5687 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5687 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5687 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5687 Gene

Proteins for MIR5687 Gene

Post-translational modifications for MIR5687 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5687 Gene

Domains & Families for MIR5687 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5687 Gene

Function for MIR5687 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5687 Gene

Localization for MIR5687 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5687 Gene

Pathways & Interactions for MIR5687 Gene

SuperPathways for MIR5687 Gene

No Data Available

Interacting Proteins for MIR5687 Gene

Gene Ontology (GO) - Biological Process for MIR5687 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5687 Gene

Drugs & Compounds for MIR5687 Gene

No Compound Related Data Available

Transcripts for MIR5687 Gene

mRNA/cDNA for MIR5687 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5687 Gene

No ASD Table

Relevant External Links for MIR5687 Gene

GeneLoc Exon Structure for
MIR5687
ECgene alternative splicing isoforms for
MIR5687

Expression for MIR5687 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5687 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5687 Gene:

MIR5687
genes like me logo Genes that share expression patterns with MIR5687: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5687 Gene

Orthologs for MIR5687 Gene

Evolution for MIR5687 Gene

ENSEMBL:
Gene Tree for MIR5687 (if available)
TreeFam:
Gene Tree for MIR5687 (if available)

No data available for Orthologs for MIR5687 Gene

Paralogs for MIR5687 Gene

No data available for Paralogs for MIR5687 Gene

Variants for MIR5687 Gene

Sequence variations from dbSNP and Humsavar for MIR5687 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000977386 -- 55,510,403(-) A/G upstream_transcript_variant
rs1005677805 -- 55,509,469(-) A/G upstream_transcript_variant
rs1005847907 -- 55,508,842(-) G/T downstream_transcript_variant
rs1007521357 -- 55,510,594(-) C/T upstream_transcript_variant
rs1010401492 -- 55,510,608(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5687 Gene

Variant ID Type Subtype PubMed ID
nsv830304 CNV gain+loss 17160897

Additional Variant Information for MIR5687 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5687

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5687 Gene

Disorders for MIR5687 Gene

Additional Disease Information for MIR5687

No disorders were found for MIR5687 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5687 Gene

Publications for MIR5687 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5687 Gene

Sources for MIR5687 Gene

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