Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR5685 Gene

Subcategory (RNA class) for MIR5685 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5685 Gene

  • MicroRNA 5685 2 3 5
  • Hsa-Mir-5685 3

External Ids for MIR5685 Gene

Previous GeneCards Identifiers for MIR5685 Gene

  • GC06U902255
  • GC06P053143

Summaries for MIR5685 Gene

Entrez Gene Summary for MIR5685 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5685 Gene

MIR5685 (MicroRNA 5685) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5685 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5685 Gene

Genomics for MIR5685 Gene

Regulatory Elements for MIR5685 Gene

Enhancers for MIR5685 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H053278 0.4 dbSUPER 0.7 +1.6 1585 0 SCRT1 SCRT2 MIR5685 GC06M053279
GH06H053275 0.2 dbSUPER 0.7 -0.4 -424 1 ELOVL5 GC06P053274 MIR5685
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5685 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5685 Gene

Chromosome:
6
Start:
53,276,993 bp from pter
End:
53,277,071 bp from pter
Size:
79 bases
Orientation:
Plus strand

Genomic View for MIR5685 Gene

Genes around MIR5685 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5685 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5685 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5685 Gene

Proteins for MIR5685 Gene

Post-translational modifications for MIR5685 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5685 Gene

Domains & Families for MIR5685 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5685 Gene

Function for MIR5685 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR5685
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5685 Gene

Localization for MIR5685 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5685 Gene

Pathways & Interactions for MIR5685 Gene

SuperPathways for MIR5685 Gene

No Data Available

Interacting Proteins for MIR5685 Gene

Gene Ontology (GO) - Biological Process for MIR5685 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5685 Gene

Drugs & Compounds for MIR5685 Gene

No Compound Related Data Available

Transcripts for MIR5685 Gene

mRNA/cDNA for MIR5685 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR5685
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5685 Gene

No ASD Table

Relevant External Links for MIR5685 Gene

GeneLoc Exon Structure for
MIR5685
ECgene alternative splicing isoforms for
MIR5685

Expression for MIR5685 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5685 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5685 Gene:

MIR5685
genes like me logo Genes that share expression patterns with MIR5685: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5685 Gene

Orthologs for MIR5685 Gene

Evolution for MIR5685 Gene

ENSEMBL:
Gene Tree for MIR5685 (if available)
TreeFam:
Gene Tree for MIR5685 (if available)

No data available for Orthologs for MIR5685 Gene

Paralogs for MIR5685 Gene

No data available for Paralogs for MIR5685 Gene

Variants for MIR5685 Gene

Sequence variations from dbSNP and Humsavar for MIR5685 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1001325935 -- 53,275,993(+) TTTAG(A/G)TTTTA intron-variant, upstream-variant-2KB
rs1001946638 -- 53,275,281(+) TCAAA(A/G)ATTTA intron-variant, upstream-variant-2KB
rs1002731181 -- 53,277,258(+) GCTGG(C/G)TATCC intron-variant, downstream-variant-500B
rs1006409425 -- 53,276,688(+) AAACA(C/T)GGGTC intron-variant, upstream-variant-2KB
rs1006690165 -- 53,277,102(+) TGTCC(C/T)TGAAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR5685 Gene

Variant ID Type Subtype PubMed ID
esv2763940 CNV gain+loss 21179565
nsv1033994 CNV gain 25217958

Relevant External Links for MIR5685 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5685

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5685 Gene

Disorders for MIR5685 Gene

Relevant External Links for MIR5685

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5685

No disorders were found for MIR5685 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5685 Gene

Publications for MIR5685 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A … Wang Y (PloS one 2011) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR5685 Gene

Sources for MIR5685 Gene

Content
Loading form....