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Aliases for MIR5684 Gene

Subcategory (RNA class) for MIR5684 Gene


Quality Score for this RNA gene is


Aliases for MIR5684 Gene

  • MicroRNA 5684 2 3 5
  • Hsa-Mir-5684 3

External Ids for MIR5684 Gene

Previous GeneCards Identifiers for MIR5684 Gene

  • GC19U901585
  • GC19P012898

Summaries for MIR5684 Gene

Entrez Gene Summary for MIR5684 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5684 Gene

MIR5684 (MicroRNA 5684) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5684 Gene

Genomics for MIR5684 Gene

Regulatory Elements for MIR5684 Gene

Enhancers for MIR5684 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F012781 1.7 FANTOM5 ENCODE 0.8 +2.2 2170 16.0 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZNF136 CCDC130 ZNF564 ZNF442 ZNF844 ZNF44 WDR83OS ZNF799 TRMT1 ZNF625
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5684 on UCSC Golden Path with GeneCards custom track

Promoters for MIR5684 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001816135 -828 201 MAZ MTA2 KLF4 ZBTB7A EP300 GLIS2 GLIS1 EED IKZF1 KLF9

Genomic Location for MIR5684 Gene

12,787,128 bp from pter
12,787,192 bp from pter
65 bases
Plus strand

Genomic View for MIR5684 Gene

Genes around MIR5684 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5684 Gene

Proteins for MIR5684 Gene

Post-translational modifications for MIR5684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5684 Gene

Domains & Families for MIR5684 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5684 Gene

Function for MIR5684 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5684 Gene

Localization for MIR5684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5684 Gene

Pathways & Interactions for MIR5684 Gene

SuperPathways for MIR5684 Gene

No Data Available

Interacting Proteins for MIR5684 Gene

Gene Ontology (GO) - Biological Process for MIR5684 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5684 Gene

Transcripts for MIR5684 Gene

mRNA/cDNA for MIR5684 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5684 Gene

No ASD Table

Relevant External Links for MIR5684 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5684 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5684 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5684 Gene

Orthologs for MIR5684 Gene

Evolution for MIR5684 Gene

Gene Tree for MIR5684 (if available)
Gene Tree for MIR5684 (if available)

No data available for Orthologs for MIR5684 Gene

Paralogs for MIR5684 Gene

No data available for Paralogs for MIR5684 Gene

Variants for MIR5684 Gene

Sequence variations from dbSNP and Humsavar for MIR5684 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10409151 -- 12,787,359(+) ggcga(A/G)gtaga downstream-variant-500B
rs10414267 -- 12,786,114(+) CTCCA(A/G)GAGAG upstream-variant-2KB
rs112239571 -- 12,785,297(+) TTTTT(-/CA)CACAC upstream-variant-2KB
rs115713295 -- 12,786,832(+) GACCC(A/G)TGCCC upstream-variant-2KB
rs116378529 -- 12,785,660(+) AGCGG(A/G)CAGAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5684 Gene

Variant ID Type Subtype PubMed ID
dgv138n111 CNV deletion 26073780
nsv1160586 CNV duplication 26073780
nsv953977 CNV deletion 24416366

Relevant External Links for MIR5684 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5684 Gene

Disorders for MIR5684 Gene

Relevant External Links for MIR5684

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR5684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5684 Gene

Publications for MIR5684 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5684 Gene

Sources for MIR5684 Gene

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