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Aliases for MIR5680 Gene

Subcategory (RNA class) for MIR5680 Gene


Quality Score for this RNA gene is


Aliases for MIR5680 Gene

  • MicroRNA 5680 2 3 5
  • Hsa-Mir-5680 3

External Ids for MIR5680 Gene

Previous GeneCards Identifiers for MIR5680 Gene

  • GC08U901604
  • GC08P103140

Summaries for MIR5680 Gene

Entrez Gene Summary for MIR5680 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5680 Gene

MIR5680 (MicroRNA 5680) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5680 Gene

Genomics for MIR5680 Gene

Regulatory Elements for MIR5680 Gene

Promoters for MIR5680 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001398007 -1632 2001 TBP PKNOX1 TBL1XR1 WRNIP1 SIN3A RAD21 YY1 EGR1 FOS RCOR1

Genomic Location for MIR5680 Gene

102,125,432 bp from pter
102,125,515 bp from pter
84 bases
Plus strand

Genomic View for MIR5680 Gene

Genes around MIR5680 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5680 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5680 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5680 Gene

Proteins for MIR5680 Gene

Post-translational modifications for MIR5680 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5680 Gene

Domains & Families for MIR5680 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5680 Gene

Function for MIR5680 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5680 Gene

Localization for MIR5680 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5680 Gene

Pathways & Interactions for MIR5680 Gene

SuperPathways for MIR5680 Gene

No Data Available

Interacting Proteins for MIR5680 Gene

Gene Ontology (GO) - Biological Process for MIR5680 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5680 Gene

Transcripts for MIR5680 Gene

mRNA/cDNA for MIR5680 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5680 Gene

No ASD Table

Relevant External Links for MIR5680 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5680 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5680 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5680 Gene:

genes like me logo Genes that share expression patterns with MIR5680: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5680 Gene

Orthologs for MIR5680 Gene

Evolution for MIR5680 Gene

Gene Tree for MIR5680 (if available)
Gene Tree for MIR5680 (if available)

No data available for Orthologs for MIR5680 Gene

Paralogs for MIR5680 Gene

No data available for Paralogs for MIR5680 Gene

Variants for MIR5680 Gene

Sequence variations from dbSNP and Humsavar for MIR5680 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs112818642 -- 102,124,381(+) TCCTC(C/G)CGGCC intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense
rs112843570 -- 102,124,260(+) CGTCT(C/G)TGTCG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs11406909 -- 102,123,460(+) ATTAG(-/A)AAAAA intron-variant, upstream-variant-2KB
rs118020917 -- 102,125,002(+) TTATC(A/G)AGTAC upstream-variant-2KB
rs12549434 -- 102,125,435(+) TTGCA(C/T)TGGGT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5680 Gene

Variant ID Type Subtype PubMed ID
esv3891452 CNV loss 25118596
nsv1020359 CNV gain 25217958

Relevant External Links for MIR5680 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5680 Gene

Disorders for MIR5680 Gene

Relevant External Links for MIR5680

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR5680 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5680 Gene

Publications for MIR5680 Gene

  1. MicroRNAs associated with metastatic prostate cancer. (PMID: 21980368) Watahiki A. … Wang Y. (PLoS ONE 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5680 Gene

Sources for MIR5680 Gene

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