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Aliases for MIR568 Gene

Subcategory (RNA class) for MIR568 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR568 Gene

  • MicroRNA 568 2 3 5
  • Hsa-Mir-568 3
  • MIRN568 3

External Ids for MIR568 Gene

Previous HGNC Symbols for MIR568 Gene

  • MIRN568

Previous GeneCards Identifiers for MIR568 Gene

  • GC03U901158
  • GC03M115520
  • GC03M114035

Summaries for MIR568 Gene

Entrez Gene Summary for MIR568 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR568 Gene

MIR568 (MicroRNA 568) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR568 include Keratoconus.

fRNAdb sequence ontologies for MIR568 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR568

Additional gene information for MIR568 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR568 Gene

Genomics for MIR568 Gene

GeneHancer (GH) Regulatory Elements for MIR568 Gene

Promoters and enhancers for MIR568 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I114312 Enhancer 0.4 dbSUPER 550.8 +0.5 517 6.7 ZSCAN4 JUNB RUNX3 MIR568 ZBTB20-AS1 CFAP44-AS1 ENSG00000259976 TIGIT ZBTB20
GH03I114319 Enhancer 0.8 Ensembl ENCODE 0.8 -3.1 -3069 0.3 FOXA2 JUN HLF MAX CEBPB MNT SP1 JUND POLR2A FOS MIR568 ENSG00000259976 ZBTB20
GH03I114290 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.3 +22.9 22942 6.4 HDGF PKNOX1 RB1 BMI1 BATF KLF5 RAD21 ZNF143 ATF7 ETV6 TIGIT DRD3 ZBTB20 MIR568
GH03I114306 Enhancer 0.9 ENCODE dbSUPER 0.4 +8.3 8321 2.8 EBF1 BATF IRF4 RELA ZSCAN29 ETV6 BCLAF1 IKZF2 RUNX3 SRF CFAP44-AS1 MIR568 TIGIT
GH03I114299 Enhancer 0.8 ENCODE dbSUPER 0.4 +16.8 16813 0.8 CTCF PKNOX1 RFX1 HLF ZNF644 RAD21 E4F1 SMC3 MIR568 TIGIT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR568 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR568 Gene

Genomic Locations for MIR568 Gene
chr3:114,316,475-114,316,569
(GRCh38/hg38)
Size:
95 bases
Orientation:
Minus strand
chr3:114,035,322-114,035,416
(GRCh37/hg19)

Genomic View for MIR568 Gene

Genes around MIR568 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR568 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR568 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR568 Gene

ORGUL Member Location for MIR568 Gene

ORGUL Member Location for MIR568 gene

Proteins for MIR568 Gene

Post-translational modifications for MIR568 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR568 Gene

Domains & Families for MIR568 Gene

Gene Families for MIR568 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR568: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR568 Gene

Function for MIR568 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR568 Gene

Localization for MIR568 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR568 Gene

Pathways & Interactions for MIR568 Gene

SuperPathways for MIR568 Gene

No Data Available

Interacting Proteins for MIR568 Gene

Gene Ontology (GO) - Biological Process for MIR568 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR568 Gene

Drugs & Compounds for MIR568 Gene

No Compound Related Data Available

Transcripts for MIR568 Gene

fRNAdb Secondary structures for MIR568 Gene

  • FR148807
  • hsa-mir-568_MI0003574_Homo_sapiens_miR-568_stem-loop_hairpin

mRNA/cDNA for MIR568 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR568 Gene

No ASD Table

Relevant External Links for MIR568 Gene

GeneLoc Exon Structure for
MIR568
ECgene alternative splicing isoforms for
MIR568

Expression for MIR568 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR568 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR568 Gene:

MIR568
genes like me logo Genes that share expression patterns with MIR568: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR568 Gene

Orthologs for MIR568 Gene

Evolution for MIR568 Gene

ENSEMBL:
Gene Tree for MIR568 (if available)
TreeFam:
Gene Tree for MIR568 (if available)

No data available for Orthologs for MIR568 Gene

Paralogs for MIR568 Gene

No data available for Paralogs for MIR568 Gene

Variants for MIR568 Gene

Sequence variations from dbSNP and Humsavar for MIR568 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1001531519 -- 114,317,262(-) T/C upstream_transcript_variant
rs1002339229 -- 114,317,270(-) T/C upstream_transcript_variant
rs1002882046 -- 114,316,956(-) C/T upstream_transcript_variant
rs1007323379 -- 114,317,917(-) A/T upstream_transcript_variant
rs1009698573 -- 114,316,665(-) A/C upstream_transcript_variant

Additional Variant Information for MIR568 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR568

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR568 Gene

Disorders for MIR568 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR568 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
keratoconus
  • conical cornea
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR568

genes like me logo Genes that share disorders with MIR568: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR568 Gene

Publications for MIR568 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 1 3 58
  2. Mutational Analysis of Pre-miR-184 and hsa-mir-568 in Greek Patients With Sporadic Keratoconus. (PMID: 26845316) Moschos MM … Gazouli M (Cornea 2016) 3 58
  3. Mechanical stress induces pre-B-cell colony-enhancing factor/NAMPT expression via epigenetic regulation by miR-374a and miR-568 in human lung endothelium. (PMID: 24053186) Adyshev DM … Garcia JG (American journal of respiratory cell and molecular biology 2014) 3 58
  4. MiR-568 inhibits the activation and function of CD4⁺ T cells and Treg cells by targeting NFAT5. (PMID: 24355664) Li W … Yang AG (International immunology 2014) 3 58
  5. Nuclear factor of activated T cells 5 maintained by Hotair suppression of miR-568 upregulates S100 calcium binding protein A4 to promote breast cancer metastasis. (PMID: 25311085) Li JT … Yang AG (Breast cancer research : BCR 2014) 3 58

Products for MIR568 Gene

Sources for MIR568 Gene

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