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Aliases for MIR564 Gene

Subcategory (RNA class) for MIR564 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR564 Gene

  • MicroRNA 564 2 3 5
  • Hsa-Mir-564 3
  • MIRN564 3

External Ids for MIR564 Gene

Previous HGNC Symbols for MIR564 Gene

  • MIRN564

Previous GeneCards Identifiers for MIR564 Gene

  • GC03P044881
  • GC03P044903
  • GC03P044865
  • GC03P044867
  • GC03P044869
  • GC03P044912
  • GC03P044949
  • GC03P044993
  • GC03P045030

Summaries for MIR564 Gene

Entrez Gene Summary for MIR564 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR564 Gene

MIR564 (MicroRNA 564) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR564 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR564 Gene

Genomics for MIR564 Gene

GeneHancer (GH) Regulatory Elements for MIR564 Gene

Promoters and enhancers for MIR564 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I044860 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.1 95 2.1 ARID4B DMAP1 ZNF48 YY1 ZNF121 GLIS2 ZNF207 ZNF143 FOS RUNX3 TMEM42 GC03P045071 MIR564 GC03P045070 ZNF502 PPIAP18 KIF15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR564 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR564 Gene

Genomic Locations for MIR564 Gene
chr3:44,861,888-44,861,981
(GRCh38/hg38)
Size:
94 bases
Orientation:
Plus strand
chr3:44,903,380-44,903,473
(GRCh37/hg19)

Genomic View for MIR564 Gene

Genes around MIR564 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR564 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR564 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR564 Gene

Proteins for MIR564 Gene

Post-translational modifications for MIR564 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR564 Gene

Domains & Families for MIR564 Gene

Gene Families for MIR564 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR564: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR564 Gene

Function for MIR564 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR564 Gene

Localization for MIR564 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR564 Gene

Pathways & Interactions for MIR564 Gene

SuperPathways for MIR564 Gene

No Data Available

Interacting Proteins for MIR564 Gene

Gene Ontology (GO) - Biological Process for MIR564 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR564 Gene

Drugs & Compounds for MIR564 Gene

No Compound Related Data Available

Transcripts for MIR564 Gene

mRNA/cDNA for MIR564 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR564 Gene

No ASD Table

Relevant External Links for MIR564 Gene

GeneLoc Exon Structure for
MIR564
ECgene alternative splicing isoforms for
MIR564

Expression for MIR564 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR564 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR564 Gene:

MIR564
genes like me logo Genes that share expression patterns with MIR564: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR564 Gene

Orthologs for MIR564 Gene

Evolution for MIR564 Gene

ENSEMBL:
Gene Tree for MIR564 (if available)
TreeFam:
Gene Tree for MIR564 (if available)

No data available for Orthologs for MIR564 Gene

Paralogs for MIR564 Gene

No data available for Paralogs for MIR564 Gene

Variants for MIR564 Gene

Sequence variations from dbSNP and Humsavar for MIR564 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000861034 -- 44,861,605(+) G/A upstream_transcript_variant
rs1002819311 -- 44,862,464(+) C/A downstream_transcript_variant
rs1002915752 -- 44,861,926(+) T/C non_coding_transcript_variant
rs1003701364 -- 44,860,008(+) G/A upstream_transcript_variant
rs1003801345 -- 44,861,345(+) C/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR564 Gene

Variant ID Type Subtype PubMed ID
nsv3792 CNV deletion 18451855
nsv834675 CNV gain 17160897

Additional Variant Information for MIR564 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR564

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR564 Gene

Disorders for MIR564 Gene

Additional Disease Information for MIR564

No disorders were found for MIR564 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR564 Gene

Publications for MIR564 Gene

  1. MiR-564 functions as a tumor suppressor in human lung cancer by targeting ZIC3. (PMID: 26498524) Yang B … Xie T (Biochemical and biophysical research communications 2015) 3 58
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini AA … Barker JN (Nature communications 2014) 3 58
  3. Downregulation of miR-31, miR-155, and miR-564 in chronic myeloid leukemia cells. (PMID: 22511990) Rokah OH … Shpilberg O (PloS one 2012) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  5. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 3 58

Products for MIR564 Gene

Sources for MIR564 Gene

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