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Aliases for MIR564 Gene

Subcategory (RNA class) for MIR564 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR564 Gene

  • MicroRNA 564 2 3 5
  • Hsa-Mir-564 3
  • MIRN564 3

External Ids for MIR564 Gene

Previous HGNC Symbols for MIR564 Gene

  • MIRN564

Previous GeneCards Identifiers for MIR564 Gene

  • GC03P044881
  • GC03P044903
  • GC03P044865
  • GC03P044867

Summaries for MIR564 Gene

Entrez Gene Summary for MIR564 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR564 Gene

MIR564 (MicroRNA 564) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR564 Gene

Genomics for MIR564 Gene

Regulatory Elements for MIR564 Gene

Enhancers for MIR564 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MIR564 on UCSC Golden Path with GeneCards custom track

Promoters for MIR564 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MIR564 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR564 Gene

Chromosome:
3
Start:
44,861,888 bp from pter
End:
44,861,981 bp from pter
Size:
94 bases
Orientation:
Plus strand

Genomic View for MIR564 Gene

Genes around MIR564 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR564 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR564 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR564 Gene

Proteins for MIR564 Gene

Post-translational modifications for MIR564 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR564 Gene

Domains & Families for MIR564 Gene

Gene Families for MIR564 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR564: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR564 Gene

Function for MIR564 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR564 Gene

Localization for MIR564 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR564 Gene

Pathways & Interactions for MIR564 Gene

SuperPathways for MIR564 Gene

No Data Available

Interacting Proteins for MIR564 Gene

Gene Ontology (GO) - Biological Process for MIR564 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR564 Gene

Drugs & Compounds for MIR564 Gene

No Compound Related Data Available

Transcripts for MIR564 Gene

mRNA/cDNA for MIR564 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR564 Gene

No ASD Table

Relevant External Links for MIR564 Gene

GeneLoc Exon Structure for
MIR564
ECgene alternative splicing isoforms for
MIR564

Expression for MIR564 Gene

mRNA expression in normal human tissues for MIR564 Gene

genes like me logo Genes that share expression patterns with MIR564: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR564 Gene

Orthologs for MIR564 Gene

Evolution for MIR564 Gene

ENSEMBL:
Gene Tree for MIR564 (if available)
TreeFam:
Gene Tree for MIR564 (if available)

No data available for Orthologs for MIR564 Gene

Paralogs for MIR564 Gene

No data available for Paralogs for MIR564 Gene

Variants for MIR564 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR564 Gene

Variant ID Type Subtype PubMed ID
nsv834675 CNV Gain 17160897
nsv3792 CNV Loss 18451855

Relevant External Links for MIR564 Gene

HapMap Linkage Disequilibrium report
MIR564

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for MIR564 Gene

Disorders for MIR564 Gene

Relevant External Links for MIR564

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR564

No disorders were found for MIR564 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR564 Gene

Publications for MIR564 Gene

  1. MiR-564 functions as a tumor suppressor in human lung cancer by targeting ZIC3. (PMID: 26498524) Yang B. … Xie T. (Biochem. Biophys. Res. Commun. 2015) 3 67
  2. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3
  3. Downregulation of miR-31, miR-155, and miR-564 in chronic myeloid leukemia cells. (PMID: 22511990) Rokah O.H. … Shpilberg O. (PLoS ONE 2012) 3
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  5. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3

Products for MIR564 Gene

Sources for MIR564 Gene

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