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Aliases for MIR563 Gene

Subcategory (RNA class) for MIR563 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR563 Gene

  • MicroRNA 563 2 3
  • Hsa-Mir-563 3
  • MIRN563 3

External Ids for MIR563 Gene

ORGUL Members for MIR563 Gene

Previous HGNC Symbols for MIR563 Gene

  • MIRN563

Previous GeneCards Identifiers for MIR563 Gene

  • GC03P015891
  • GC03P015915

Summaries for MIR563 Gene

Entrez Gene Summary for MIR563 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR563 Gene

MIR563 (MicroRNA 563) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR563 Gene

Genomics for MIR563 Gene

Genomic Location for MIR563 Gene

Start:
15,873,771 bp from pter
End:
15,873,849 bp from pter
Size:
79 bases
Orientation:
Plus strand

Genomic View for MIR563 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR563 Gene

No data available for Regulatory Elements for MIR563 Gene

Proteins for MIR563 Gene

Post-translational modifications for MIR563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR563 Gene

Domains for MIR563 Gene

Gene Families for MIR563 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR563: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR563 Gene

Function for MIR563 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR563 Gene

Localization for MIR563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR563 Gene

Pathways for MIR563 Gene

SuperPathways for MIR563 Gene

No Data Available

Interacting Proteins for MIR563 Gene

Gene Ontology (GO) - Biological Process for MIR563 Gene

None

No data available for Pathways by source for MIR563 Gene

Transcripts for MIR563 Gene

mRNA/cDNA for MIR563 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR563 Gene

No ASD Table

Relevant External Links for MIR563 Gene

GeneLoc Exon Structure for
MIR563
ECgene alternative splicing isoforms for
MIR563

Expression for MIR563 Gene

mRNA expression in normal human tissues for MIR563 Gene

genes like me logo Genes that share expressions with MIR563: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR563 Gene

Orthologs for MIR563 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR563 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 74 (a)
OneToOne
Species with no ortholog for MIR563:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR563 Gene

ENSEMBL:
Gene Tree for MIR563 (if available)
TreeFam:
Gene Tree for MIR563 (if available)

Paralogs for MIR563 Gene

No data available for Paralogs for MIR563 Gene

Variants for MIR563 Gene

Sequence variations from dbSNP and Humsavar for MIR563 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1597068 -- 15,871,856(+) cccca(A/G)ttccc upstream-variant-2KB
rs2121738 -- 15,873,175(+) GCTAA(C/T)TGGAA upstream-variant-2KB
rs2166761 -- 15,873,331(+) aatca(A/G)ttaac upstream-variant-2KB
rs6802027 -- 15,872,439(+) atcat(A/G)aattt upstream-variant-2KB
rs10514667 -- 15,873,647(+) CTTTC(C/T)GTTAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR563 Gene

Variant ID Type Subtype PubMed ID
nsv529014 CNV Loss 19592680

Relevant External Links for MIR563 Gene

HapMap Linkage Disequilibrium report
MIR563

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR563 Gene

Disorders for MIR563 Gene

No disorders were found for MIR563 Gene.

No data available for UniProtKB/Swiss-Prot for MIR563 Gene

Publications for MIR563 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3

Products for MIR563 Gene

Sources for MIR563 Gene

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