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Aliases for MIR559 Gene

Subcategory (RNA class) for MIR559 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR559 Gene

  • MicroRNA 559 2 3 5
  • Hsa-Mir-559 3
  • MIRN559 3

External Ids for MIR559 Gene

ORGUL Members for MIR559 Gene

Previous HGNC Symbols for MIR559 Gene

  • MIRN559

Previous GeneCards Identifiers for MIR559 Gene

  • GC02P047459
  • GC02P047605
  • GC02P047606
  • GC02P047379
  • GC02P047380
  • GC02P047381
  • GC02P047382
  • GC02P047384
  • GC02P047385
  • GC02P047386

Summaries for MIR559 Gene

Entrez Gene Summary for MIR559 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR559 Gene

MIR559 (MicroRNA 559) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR559 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR559 Gene

Genomics for MIR559 Gene

GeneHancer (GH) Regulatory Elements for MIR559 Gene

Promoters and enhancers for MIR559 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I047297 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -78.0 -78017 3.7 PKNOX1 ATF1 ZNF766 ATF7 RUNX3 CAVIN1 ZNF592 MEF2D NBN NR2C1 PIR58315 LOC101927043 ENSG00000228925 MSH6 SOCS5 CALM2 EPCAM MIR559 KCNK12 PIR36995
GH02I047336 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 -40.7 -40719 1.8 PKNOX1 ATF1 IRF4 TCF12 ZNF766 GATA2 ZNF207 ATF7 RUNX3 NCOA1 BCYRN1 GC02P047335 MIR559 LOC101927043
GH02I047334 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.2 -42.8 -42759 1.5 ARNT ARID4B ZNF2 TCF12 ZNF121 ZNF766 ARID2 ATF7 NCOA1 REST BCYRN1 GC02P047335 FBXO11 SOCS5 MIR559 MSH6 LOC101927043 GC02M047306
GH02I047302 Enhancer 0.8 dbSUPER 10.6 -73.4 -73407 3 HDAC1 MZF1 TCF12 FOS PHF21A SP1 NFIL3 ATF4 PRDM6 SMARCA4 GC02M047305 MIR559 LOC101927043 PIR58315
GH02I047351 Enhancer 0.4 dbSUPER 11.8 -25.8 -25786 1.4 BCOR MAFK MSH2 MIR559 EPCAM RN7SKP119
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR559 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR559 Gene

Genomic Locations for MIR559 Gene
chr2:47,377,675-47,377,770
(GRCh38/hg38)
Size:
96 bases
Orientation:
Plus strand
chr2:47,604,814-47,604,909
(GRCh37/hg19)

Genomic View for MIR559 Gene

Genes around MIR559 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR559 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR559 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR559 Gene

Proteins for MIR559 Gene

Post-translational modifications for MIR559 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR559 Gene

Domains & Families for MIR559 Gene

Gene Families for MIR559 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR559: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR559 Gene

Function for MIR559 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR559 Gene

Localization for MIR559 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR559 Gene

Pathways & Interactions for MIR559 Gene

SuperPathways for MIR559 Gene

No Data Available

Interacting Proteins for MIR559 Gene

Gene Ontology (GO) - Biological Process for MIR559 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR559 Gene

Drugs & Compounds for MIR559 Gene

No Compound Related Data Available

Transcripts for MIR559 Gene

mRNA/cDNA for MIR559 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR559 Gene

No ASD Table

Relevant External Links for MIR559 Gene

GeneLoc Exon Structure for
MIR559
ECgene alternative splicing isoforms for
MIR559

Expression for MIR559 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR559 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR559 Gene:

MIR559
genes like me logo Genes that share expression patterns with MIR559: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR559 Gene

Orthologs for MIR559 Gene

Evolution for MIR559 Gene

ENSEMBL:
Gene Tree for MIR559 (if available)
TreeFam:
Gene Tree for MIR559 (if available)

No data available for Orthologs for MIR559 Gene

Paralogs for MIR559 Gene

No data available for Paralogs for MIR559 Gene

Variants for MIR559 Gene

Sequence variations from dbSNP and Humsavar for MIR559 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs371372017 likely-benign, Lynch syndrome 47,377,038(+) G/A/C upstream_transcript_variant
rs587780768 uncertain-significance, Lynch syndrome 47,377,018(+) C/A/T upstream_transcript_variant
rs606231204 pathogenic, Diarrhea 5, with tufting enteropathy, congenital, not provided 47,377,021(+) C/CC upstream_transcript_variant
rs606231281 pathogenic, Diarrhea 5, with tufting enteropathy, congenital, not provided 47,377,012(+) A/G upstream_transcript_variant
rs74531854 likely-benign, benign, Lynch syndrome, not specified, Hereditary nonpolyposis colon cancer 47,377,037(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR559 Gene

Variant ID Type Subtype PubMed ID
nsv1004828 CNV gain 25217958
nsv1009586 CNV gain 25217958
nsv999576 CNV gain 25217958

Additional Variant Information for MIR559 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR559

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR559 Gene

Disorders for MIR559 Gene

Additional Disease Information for MIR559

No disorders were found for MIR559 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR559 Gene

Publications for MIR559 Gene

  1. Preliminary validation of ERBB2 expression regulated by miR-548d-3p and miR-559. (PMID: 19486885) Chen H … Chen ZT (Biochemical and biophysical research communications 2009) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  3. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 3 58

Products for MIR559 Gene

Sources for MIR559 Gene

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