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Aliases for MIR5580 Gene

Subcategory (RNA class) for MIR5580 Gene


Quality Score for this RNA gene is


Aliases for MIR5580 Gene

  • MicroRNA 5580 2 3 5
  • Hsa-Mir-5580 3

External Ids for MIR5580 Gene

Previous GeneCards Identifiers for MIR5580 Gene

  • GC14U901303
  • GC14M054419

Summaries for MIR5580 Gene

Entrez Gene Summary for MIR5580 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5580 Gene

MIR5580 (MicroRNA 5580) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5580 Gene

Genomics for MIR5580 Gene

Regulatory Elements for MIR5580 Gene

Enhancers for MIR5580 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around MIR5580 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5580 Gene

53,948,427 bp from pter
53,948,484 bp from pter
58 bases
Minus strand

Genomic View for MIR5580 Gene

Genes around MIR5580 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5580 Gene

ORGUL Member Location for MIR5580 Gene

ORGUL Member Location for MIR5580 gene

Proteins for MIR5580 Gene

Post-translational modifications for MIR5580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5580 Gene

Domains & Families for MIR5580 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5580 Gene

Function for MIR5580 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5580 Gene

Localization for MIR5580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5580 Gene

Pathways & Interactions for MIR5580 Gene

SuperPathways for MIR5580 Gene

No Data Available

Interacting Proteins for MIR5580 Gene

Gene Ontology (GO) - Biological Process for MIR5580 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5580 Gene

Drugs & Compounds for MIR5580 Gene

No Compound Related Data Available

Transcripts for MIR5580 Gene

mRNA/cDNA for MIR5580 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5580 Gene

No ASD Table

Relevant External Links for MIR5580 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5580 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5580 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5580 Gene

Orthologs for MIR5580 Gene

Evolution for MIR5580 Gene

Gene Tree for MIR5580 (if available)
Gene Tree for MIR5580 (if available)

No data available for Orthologs for MIR5580 Gene

Paralogs for MIR5580 Gene

No data available for Paralogs for MIR5580 Gene

Variants for MIR5580 Gene

Sequence variations from dbSNP and Humsavar for MIR5580 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs67293627 -- 53,949,031(+) GTTAC(-/AA)AAAAA upstream-variant-2KB
rs57728983 -- 53,949,045(+) AAAAA(-/AA)GACAA upstream-variant-2KB
rs74054233 -- 53,948,218(+) GAATG(C/G)AAGGG downstream-variant-500B
rs74054235 -- 53,948,225(+) AGGGT(A/G)CACAC downstream-variant-500B
rs59369410 -- 53,949,046(+) AAAAA(-/A/AA)GACAA upstream-variant-2KB

Relevant External Links for MIR5580 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR5580 Gene

Disorders for MIR5580 Gene

Relevant External Links for MIR5580

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR5580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5580 Gene

Publications for MIR5580 Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) FriedlAonder M.R. … Rajewsky N. (Nucleic Acids Res. 2012) 3 65
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 65

Products for MIR5580 Gene

Sources for MIR5580 Gene

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