Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR5580 Gene

Subcategory (RNA class) for MIR5580 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5580 Gene

  • MicroRNA 5580 2 3
  • Hsa-Mir-5580 3

External Ids for MIR5580 Gene

Summaries for MIR5580 Gene

Entrez Gene Summary for MIR5580 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5580 Gene

MIR5580 (MicroRNA 5580) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5580 Gene

Genomics for MIR5580 Gene

Genomic Location for MIR5580 Gene

Start:
53,948,427 bp from pter
End:
53,948,484 bp from pter
Size:
58 bases
Orientation:
Minus strand

Genomic View for MIR5580 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR5580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5580 Gene

ORGUL Member Location for MIR5580 Gene

ORGUL Member Location for MIR5580 gene

No data available for Regulatory Elements for MIR5580 Gene

Proteins for MIR5580 Gene

Post-translational modifications for MIR5580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5580 Gene

Domains for MIR5580 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for MIR5580 Gene

Function for MIR5580 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR5580 Gene

Localization for MIR5580 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR5580 Gene

Pathways for MIR5580 Gene

SuperPathways for MIR5580 Gene

No Data Available

Interacting Proteins for MIR5580 Gene

Gene Ontology (GO) - Biological Process for MIR5580 Gene

None

No data available for Pathways by source for MIR5580 Gene

Transcripts for MIR5580 Gene

mRNA/cDNA for MIR5580 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5580 Gene

No ASD Table

Relevant External Links for MIR5580 Gene

GeneLoc Exon Structure for
MIR5580
ECgene alternative splicing isoforms for
MIR5580

Expression for MIR5580 Gene

No Expression Related Data Available

Orthologs for MIR5580 Gene

Evolution for MIR5580 Gene

ENSEMBL:
Gene Tree for MIR5580 (if available)
TreeFam:
Gene Tree for MIR5580 (if available)

No data available for Orthologs for MIR5580 Gene

Paralogs for MIR5580 Gene

No data available for Paralogs for MIR5580 Gene

Variants for MIR5580 Gene

Sequence variations from dbSNP and Humsavar for MIR5580 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs12893484 -- 53,948,020(+) GCCTG(A/G)GGCTC downstream-variant-500B
rs12898159 -- 53,948,573(+) ACACC(C/T)GTCAT upstream-variant-2KB
rs57728983 -- 53,949,045(+) AAAAA(-/AA)GACAA upstream-variant-2KB
rs59369410 -- 53,949,046(+) AAAAA(-/A/AA)GACAA upstream-variant-2KB
rs59702220 -- 53,949,155(+) GTTTC(-/AA)AAAAA upstream-variant-2KB

Relevant External Links for MIR5580 Gene

HapMap Linkage Disequilibrium report
MIR5580

No data available for Structural Variations from Database of Genomic Variants (DGV) for MIR5580 Gene

Disorders for MIR5580 Gene

No disorders were found for MIR5580 Gene.

No data available for UniProtKB/Swiss-Prot for MIR5580 Gene

Publications for MIR5580 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) FriedlAonder M.R. … Rajewsky N. (Nucleic Acids Res. 2012) 3

Products for MIR5580 Gene

Sources for MIR5580 Gene

Back to Top

Content